Sequence
atgc intronic sequence ATGC exonic sequence...ttctttttcaagacttaatacgaaactgaaacgtttgaggagaacgttcatgggtattaattagatgtaacaattgtttggttatctttcaatttcttagGTTGGGGACCCCATAATTGACCACAACTGTTGGGAAAGGCCAGAAGATATGGACACTGCCAGGACGGTCTACGCCGTTGAGGCCCCAAACCCGGCTTCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00630.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G01030.1 (Glycine max), 3'ss of exon 1
ttctttttcaagacttaatacgaaactgaaacgtttgaggagaacgttcatgggtattaattagatgtaacaattgtttggttatcttt-caatttct-tagGTTGGGGACCCCATAATTGACCACAACTGTTGGGAAAGGCCAGAAGATATGGACACTGCCAGGACGGTCTACGCCGTTGAGGCCCCAAACCCGGCTTCCG
| | | || |||| ||| || | | | || | | || |||| | || | || | | ||||| | ||||| || || || || ||||||||| |||||||||||||| || || |||||||| |||||| || || || ||||| || |||||||| ||||| |
-ttctgtaatttacataatttttttagaaaaaaattaaccaatatcttta-aatcactagttaggttaaagcaccaactgataaaaaaaataatttatgtagGTGGGTGATCCAATCTCTGACCACAATTGTTGGGAAAGGCCTGAGGACATGGACACAAGCAGGACAGTGTATGCTGTTGATGCACCAAACCCAGCTTCAG
upper sequence: Vv03s0038g00630.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G01060.1 (Glycine max), 3'ss of exon 1
ttctttttcaagacttaatacgaaactgaaacgtttgaggagaacgttcatgg-gtattaattagatgtaacaattgttt--ggttatctttcaatttct-tagGTTGGGGACCCCATAATTGACCACAACTGTTGGGAAAGGCCAGAAGATATGGACACTGCCAGGACGGTCTACGCCGTTGAGGCCCCAAACCCGGCTTCCG
| || |||| ||||| || || || | | || | | || || |||| | | || | || ||||| | ||||| || || || || ||||||||| |||||||||||||| || || |||||||| |||||| || || || ||||| || |||||||| ||||| |
---ctaatccagacg-aatacatcaccgacgcgccaaggatggcagtgtgttccattcccttttcatttaacgaataattaagactaatcacaaatttatgtagGTGGGTGATCCAATCTCTGACCACAATTGTTGGGAAAGGCCTGAGGACATGGACACAAACAGGACAGTGTATGCTGTTGATGCTCCAAACCCAGCTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcatgggtattaattagatgtaacaattgtttggttatctttcaatttcttagGTTGGGGACCCCATAATTGACCACAACTGTTGGGAAAGGCCAGAAGATATGGACACTGCCAGGACGGTCTACGCCGTTGAGGCCCCAAACCCGGCTTCCG
tctttcaatttctt CT-rich tract
tattaattagatgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctttttcaagacttaatacgaaactgaaacgtttgaggagaacgttcatgggtattaattagatgtaacaattgtttggttatctttcaatttcttagGTTGGGGACCCCATAATTGACCACAACTGTTGGGAAAGGCCAGAAGATATGGACACTGCCAGGACGGTCTACGCCGTTGAGGCCCCAAACCCGGCTTCCG
- - - - - - - - - - - aaactga
- - - - - - - - - - - - - - - - - - -aggagaa
- - - - - - - - - - - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg