1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...accacattggtgttttcaatcatctttgaagaacatttttcattgtgttagctaagatttgatttcaaggactaagaaatctgtcacaatgtgtttacagGTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTAACGACTGCTTTGACCCATGTTTTAAATGATACCTTGGAAAATTTGGCTC
species | Vitis vinifera |
transcript | Vv03s0038g00510.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGAAATGCTCGTGGAAAGCGCGCATTTCTCGTCGATACATTGGCACTG GTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTAEST: gi|161715659|gb|FC067789.1|FC067789
genomic: TCGGAAATGGTCGTGGAAAGCGCGCATTTCTCGTTGATACATTGGCACTGgtaattgctg ... gtgtttacagGTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTA
EST: TCGGAAATGCTCGTGGAAAGCGCGCATTTCTCGTCGATACATTGGCACTG GTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTA
genomic: TCGGAAATGGTCGTGGAAAGCGCGCATTTCTCGTTGATACATTGGCACTGgtaattgctg ... gtgtttacagGTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTA
tgttagctaagatttgatttcaaggactaagaaatctgtcacaatgtgtttacagGTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTAACGACTGCTTTGACCCATGTTTTAAATGATACCTTGGAAAATTTGGCTC
atttgat putative branch site (score: 5)
atttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accacattggtgttttcaatcatctttgaagaacatttttcattgtgttagctaagatttgatttcaaggactaagaaatctgtcacaatgtgtttacagGTTAAGAGTTTAGAAGCAGAGGGCATGCCATCAAAACAAGCTGAGGCGGTAACGACTGCTTTGACCCATGTTTTAAATGATACCTTGGAAAATTTGGCTC
-ccacatt
- - - - - - - -tcaatca
- - - - - - - - - - - - - -gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcac