Sequence
atgc intronic sequence ATGC exonic sequence...tgtaaatggatttttggtttgcaacactgatgtaccttccatgtacccaggtgatgattttatgtggggtctgtaatgggcaaaatattttgttatgcagAATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATGGCTTCAGAAGAAGATGATTTTCCGGTTTGGATAAGTGATGATGGCCCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G30110.1 (Glycine max), 3'ss of exon 1
-tgtaaatggatttttggtttgcaacactgatgtaccttccatgtaccca-ggtgatgattttatgtggggtctgtaatgggcaaaatattttgttatgcagAATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATGGCTTCAGAAGAAGATGATTTTCCGGTTTGGATAAGTGATGATGGCCCAT
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ctggtagagggtatataatttcctttattaacagggccccttaatattaatggaaaagagtatctgattattcaatactccccatcatgcatcttt--gcagAATGAAATTATCTTGTCATCACTCCGAAAATCCAGAAAAGTTGCTGTCATGGCTTCAGAAGAAAATGATGCGCCAACTTGGATAAGTGACGATGGTCCTT
upper sequence: Vv03s0038g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G07200.1 (Glycine max), 3'ss of exon 1
tgtaaatggatttttggtttgcaacactgat-gtaccttccatgtacccaggtgatgattttatgtggggtctgtaatgggcaaaatattttgttatgcagAATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATGGCTTCAGAAGAAGATGATTTTCCGGTTTGGATAAGTGATGATGGCCCAT
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ggtaaaaggctgtataatttcctttattagcaggacaacataaatatt-aattggaaagagcatgtgattaatccattcttcccatcatgcatctttgcagAATGAAATTATCTTGTCATCACTCCGAAAATCCGGAAGAGTTGCTGTCATGGCTTCAGAAGAAAATGACGCACCGACTTGGATAAGTGACGATGGTCCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18459680|gb|BM437958.1|BM437958EST: GCGCGGGTGGCTCCGATAGAGACGCCCCAAAGCCCCTCGATATTGTTTCG AATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATG
genomic: GCGCGGGTGGCTCCGATAGAGACGCCCCAAAGCCCCTCGATATTGTTTCGgtgcgtttac ... tgttatgcagAATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccaggtgatgattttatgtggggtctgtaatgggcaaaatattttgttatgcagAATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATGGCTTCAGAAGAAGATGATTTTCCGGTTTGGATAAGTGATGATGGCCCAT
ttttgtt CT-rich tract
aaaatattttgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaaatggatttttggtttgcaacactgatgtaccttccatgtacccaggtgatgattttatgtggggtctgtaatgggcaaaatattttgttatgcagAATGAAATCATTTTATCATCTCTCCGGAACTCTGGAAAAGTAGCAGTCATGGCTTCAGAAGAAGATGATTTTCCGGTTTGGATAAGTGATGATGGCCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -aaatgga
- - - - - - - - - - gcaacac
- - - - - - - - - - - - - - - - - ccttcca
- - - - - - - - - - - - - - - - - - - - - gtaccca
- - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaaa