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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attacttcataattttggttttattttggagcagatttagtgggtttgatctcaatttttattgttgttcttgtttgacttgtgggtggtccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGGTCACTGTGGATGAACCAGGCTCAAACACAGTGCTCTACTGGAGTGAAA

Basic information

species Vitis vinifera
transcript Vv03s0038g00250.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00230.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 1
attacttcat-aattttggttttattttggagcagatttagtgggtttgatc--tcaatttttattgttgttcttgtttgacttg-tgggtggtccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGGTCACTGTGGATGAACCAGGCTCAAACACAGTGCTCTACTGGAGTGAAA
    ||| |  |||| |  || ||  ||  | ||  ||||     ||  | |  |     ||| || ||  | |  ||||| |   ||| |  |  |  |||||||||||||||| ||||| || | || ||||| || |||||| || |||||||| || ||||||||||| || || | |  |||||  ||||||||||| |
---gcttaaccaattctctttctaaattcaa-catttttacatttttgcaccctttgggattttttctttctttgatttgaatcaatggctcctatgcattaagGTTCATATAACGCAAGGTGACCTTGTGGGGAAAGCAGTGATCGTGTCATGGGTGACAGTGGATGAACCGGGGTCGAGCGAAGTGCATTACTGGAGTGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatctcaatttttattgttgttcttgtttgacttgtgggtggtccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGGTCACTGTGGATGAACCAGGCTCAAACACAGTGCTCTACTGGAGTGAAA
                           gtttgac  putative branch site (score: 4)
        aatttttattgttgtt  TA-rich tract