1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagccaaaattttctcggaaatttttttcatttgctggaaaattgttttattttttcggaaaatttcctctatcttacgccgcccaaggagccgactcttgctaacatgcgccgttcccgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACGTGGCAAAAGTGGAGAAGATCGAATCGGACGGCAGAGGAAGCGTGAAGGT
species | Vitis vinifera |
transcript | Vv03s0038g00160.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAG CCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACGEST: gi|110391870|gb|EC956881.1|EC956881
genomic: ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaa ... cgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
EST: CTAGACTCTTACACAATCAAATCTATCAATATAACAATTCGAG CCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACGEST: gi|71875325|gb|DT024380.1|DT024380
genomic: CTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaa ... cgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
EST: ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAG CCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
genomic: ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaa ... cgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
cttacgccgcccaaggagccgactcttgctaacatgcgccgttcccgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACGTGGCAAAAGTGGAGAAGATCGAATCGGACGGCAGAGGAAGCGTGAAGGT
tgctaac putative branch site (score: 1)
ttcccgtttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccaaaattttctcggaaatttttttcatttgctggaaaattgttttattttttcggaaaatttcctctatcttacgccgcccaaggagccgactcttgctaacatgcgccgttcccgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACGTGGCAAAAGTGGAGAAGATCGAATCGGACGGCAGAGGAAGCGTGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA