Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttctcttccactcctcattgatcattatacggatgctcaaagaagaaaatgattaaatattaatatctgattcattatcgttagcataaagcaataatatgtacatgcactctctttacttatgttctccttgtgttccaatgtttttcttttcctggattgaatctctagAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAG

Basic information

species Vitis vinifera
transcript Vv03s0017g02280.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g02280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S25_131V6.1 (Physcomitrella patens), 3'ss of exon 1
gtacgttctcttccactcctcattgatcattatacggatgctcaaagaagaaaatgattaaatattaatatctgattcattatcgttagcataaagcaataatatg-tacatgcactctctttacttatgttc--tccttgtgttccaatgtttttcttttcctggattgaatctctagAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAG
                                                                                | | | |  | |||     || ||   |  |||   ||     | |  | ||   || |        | |  | |    ||  ||     |||    |||||| || || ||  |  | |||||||| ||||| || |||||||| |||||||||||| | |||||||||||||||
------------------------------------------------------------------------------gatgttgctgac-taagttggtagtaaaatgtatgtcttcgtgggattagtattaggtcatcaaaactaactcgtctgtcattgttgttcacaatggacagAGGCTACACCGAAATCTGTAATGAGAGTCATGGGAGTGAAGGGTCTTACTCTTTACCATTTGAAGAGCCATCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868125|gb|DT017180.1|DT017180
EST:     GCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATA                         AGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTC
genomic: GCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATAgtacgttctc ... gaatctctagAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTC
EST: gi|77580162|gb|DV218981.1|DV218981
EST:     GCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATA                         AGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTC
genomic: GCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATAgtacgttctc ... gaatctctagAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTC
EST: gi|71874939|gb|DT023994.1|DT023994
EST:     GCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATA                         AGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTC
genomic: GCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATAgtacgttctc ... gaatctctagAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttatgttctccttgtgttccaatgtttttcttttcctggattgaatctctagAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAG
                                                tctct  CT-rich tract
                       aatgtttttctttt  TA-rich tract