Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT

Basic information

species Vitis vinifera
transcript Vv03s0017g01350.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 1
-------------gttttcctctcaccaaag------------ccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctctt----cgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT
              |  ||| ||| ||   |             |   ||  | | | |||   | ||  || |       | |      || ||     | | ||      | ||| |||||||||| ||||| || || || || || || ||||||||||||||||| |||||||| ||||| ||
gtacccatttctcctcctcccctccccgcgggcgacgtggtcgtctcgatccggtccggctggttgtttcttgtagcgcggtttgatctgattttgtggtcgccctgatgatgttttgcgcagTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
------------gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactctt--------ggtaaatcttaactcct---ctcttcgcttt---tcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT
               |  |  |  |   | |||  |  |||    |   | |  || |    ||  | | ||        |||   |  | | || |    | | ||| ||   |  |||||||| ||||| || || || || || || ||||||||||||||||| |||||||| ||||| ||
gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagatttttttttcgtgggtggcttctgattcgtgtggtttccgccttcgttttcagTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT
                                                                 |||   |  |        || || | | |     ||  | |||   ||  |      |        ||| | | | || | ||| ||  ||||||||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||||| ||||||
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 1
gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT
||    |  ||        |  |  |  || ||| | ||  ||   ||||||      || ||     | ||    | |       | |||||||||||  |||| ||||| || || || ||||| ||||| |||||||| ||||||||||| |||||
gtggctccatctttttcttctca--tcaattctgttctcgttta--tctctttgttatttcgtttgattcaatcgattttggtttgtgtcgcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGACGATCAAAAACT

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT
   | | |  |  | ||  |   | | ||  || | ||  || |  |        |  ||| |||   ||  |   | |||||| ||    ||||||||  | || ||||| ||||| ||||| ||||||||||||||||| || || || ||||||||
--gtgcgtgacggcgaaatc--gaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgttt----cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041278|gb|FQ447405.1|FQ447405
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|161708372|gb|FC057494.1|FC057494
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|71858575|gb|DT007630.1|DT007630
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110709928|gb|EE085815.1|EE085815
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|30254132|gb|CB971147.1|CB971147
EST:     TTCTCTCTCACTCTCACGGCCCTAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCCAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|30303751|gb|CB980545.1|CB980545
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110686550|gb|EE064318.1|EE064318
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|34549826|gb|CF518058.1|CF518058
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110703116|gb|EE079679.1|EE079679
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110692010|gb|EE070768.1|EE070768
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110686044|gb|EE063293.1|EE063293
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|30303557|gb|CB980351.1|CB980351
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110690121|gb|EE066941.1|EE066941
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|77584224|gb|DV221176.1|DV221176
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110687325|gb|EE064639.1|EE064639
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|351031319|gb|FQ445344.1|FQ445344
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TCCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|349818266|gb|FQ409041.1|FQ409041
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|71872051|gb|DT021106.1|DT021106
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110686489|gb|EE064185.1|EE064185
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|351043763|gb|FQ431315.1|FQ431315
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110705320|gb|EE082057.1|EE082057
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|77582325|gb|DV220132.1|DV220132
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110702349|gb|EE080961.1|EE080961
EST:     CTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: CTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|161718545|gb|FC065376.1|FC065376
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|33406814|gb|CF212441.1|CF212441
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|161710419|gb|FC061114.1|FC061114
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|294967313|gb|GW836667.1|GW836667
EST:     GACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: GACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110687004|gb|EE064045.1|EE064045
EST:     CTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: CTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|71858106|gb|DT007161.1|DT007161
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110695508|gb|EE073605.1|EE073605
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110689843|gb|EE066424.1|EE066424
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|33407688|gb|CF213315.1|CF213315
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|161709975|gb|FC058485.1|FC058485
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|349814419|gb|FQ398859.1|FQ398859
EST:     TTCTCTTTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110387508|gb|EC952179.1|EC952179
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110686570|gb|EE064362.1|EE064362
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|71865483|gb|DT014538.1|DT014538
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|352798903|gb|FQ480752.1|FQ480752
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|351022641|gb|FQ428550.1|FQ428550
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|349818085|gb|FQ408860.1|FQ408860
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|30135834|gb|CB921172.1|CB921172
EST:     CTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCGGAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: CTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|349812997|gb|FQ411237.1|FQ411237
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|349831058|gb|FQ420728.1|FQ420728
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|351012895|gb|FQ430458.1|FQ430458
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|352793839|gb|FQ481993.1|FQ481993
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|349823129|gb|FQ400108.1|FQ400108
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|33407408|gb|CF213035.1|CF213035
EST:     TTCTCTCTCACTCTCACGGCGATCGACAGAGACTGTGATCCAAAATGAAG                         CTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110708752|gb|EE086649.1|EE086649
EST:     TCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110692741|gb|EE068362.1|EE068362
EST:     CTCTCACTCTCTCGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: CTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110732397|gb|EE107650.1|EE107650
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|351021777|gb|FQ437162.1|FQ437162
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGAC--TGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110707350|gb|EE083672.1|EE083672
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110689801|gb|EE066341.1|EE066341
EST:     TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|110730182|gb|EE106970.1|EE106970
EST:     ACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: ACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
EST: gi|351046234|gb|FQ442612.1|FQ442612
EST:     TTCTCTCTCACTCTCACGGCGGAAGCCAGAGACTGTGATCCAAAATGAAG                         TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT
genomic: TTCTCTCTCACTCTCACGGCGGGAGCCAGAGACTGTGATCCAAAATGAAGgttttcctct ... cttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT
                           tcttaac  putative branch site (score: 2)
                           tcttaactcctctctt  CT-rich tract
                       taaatcttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC