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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgattccctcgtttctatttcttgcattggattttgaatttcttgtattttgtatcaatttgtggcgttttctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG

Basic information

species Vitis vinifera
transcript Vv03s0017g00680.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G19550.1 (Glycine max), 3'ss of exon 1
--------------gttcgtgattccctcgtttctattt--cttgcattggattttgaatttcttgtattttgtatcaatttgtggcgttttctttggtaa--------tgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG
               ||  |  |||  |  ||| ||||    || |     || ||  |||| |||| || | |||  ||||        |   |||||          | |||||| | |||||||||||||| || |||||||| || ||||| ||||| |||||||| || ||||||||||||||||| || || || || |||
gtaataataacatcatttctctttcttttctttttattctctttactccctatctttcattttttgttttat-tattcatttactctacctcacttggtgtctctctctttcagACTATTAATCTGGCTGCGATTTGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG

upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 1
gttcgtgattccctcgtttctatttcttgcattggattttgaatttcttgtattttgtatcaatttgtggcgttttctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG
  |  | || || || ||||| ||||||         ||    ||| || |||||| | | |  | ||  |||||  ||      | |||||| | ||||||||||| || || |||||||| || ||||| || || |||||||| || ||||||||||||||||| || || || || |||
-gtaataataccttcttttctctttctt---------ttcctctttgttttattttct-ttacatcgtatcgtttctttctccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG

upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------------------------------------------------------gttcgtgattccctcgtttctatttcttgcattggattttgaatttcttgtattttgtatcaatttgtggcgttt-tctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG
                                                                        ||||| ||  |    ||   || | | ||| || |||  || |   |  | || ||    ||||  ||  |||| | |||||    ||||| | | ||||| ||||||||||||||||| || || |||||||| |||||||| ||||| || |||||||||||||||||||| |||||||| 
gtaaaaatgcttatcgatttcgttttttgatctcttgttcttcggtgtttatgatagaagtctcagatctgattcgttat--cggaattcagatgtttcgcaatgtattgaga-tcggtgatgttgtgatgtaattc-tgatgtttctttttggattcgcagATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT

upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 3'ss of exon 1
------------------------------------------------gttcgtgattccctcgtttctatttcttgc-----attggattttgaatttcttgtattttgt---atcaatttgtggc-gttttctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG
                                                |   ||||   |   | |   |||  ||       || | |||| |||||     | | ||||   || ||| ||| |  ||| | || | |  |||||||  | ||||| ||||||||||||||||| ||||| |||||||| |||||||| || || || |||||||||||||||||||| || ||||||
gtatttgttcttcgtttcttcttagtaaatcgttaatgtgaaaatgttgaatgtgaagactcagatctgattcgttatgtgaaatcgaatttcgaattgtggatgtcttgtttaattaatctgttgttgttgttttggattttgcagACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATTGATGCTCTCCCAGTG

upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S379_19V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------gttcgtgattccct--cgtttctatttcttgcattggattttg-aatttcttgtattttgtatcaatttgtggcgttttctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG-------
                | | |||   |   |||| |  ||| |    ||   ||||   |||| |  |   ||   |    || || || |||   || |     ||  | ||||  |||||||||| ||||| || || |||||||||||||||||||||||||| || |||||||| ||  | || || || || |||       
atgccgattacatgacttgcgatgaacggacgttgccttttttcattttcattttttcgatttgtgattgattactttgcattatgacggttt---tgat----tagGTTATCAACTTGGCTGCGATTTGTACGCCAGCTGACTACAATACTCGTCCTCTCGATACCATCTACAGCAACTTTGTAGACGCCCTGCCCGTGGTGCAAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732834|gb|EE108465.1|EE108465
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71857780|gb|DT006835.1|DT006835
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71857207|gb|DT006262.1|DT006262
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|110387369|gb|EC952029.1|EC952029
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71864027|gb|DT013082.1|DT013082
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCACCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71865169|gb|DT014224.1|DT014224
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71855267|gb|DT004322.1|DT004322
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71859790|gb|DT008845.1|DT008845
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|110686702|gb|EE064638.1|EE064638
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|110359156|gb|EC920189.1|EC920189
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|161710980|gb|FC060335.1|FC060335
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|30253074|gb|CB970625.1|CB970625
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|30320980|gb|CD004242.1|CD004242
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|110685502|gb|EE062276.1|EE062276
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71862682|gb|DT011737.1|DT011737
EST:     ACATCAAGCACGATTCAAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|77585098|gb|DV221638.1|DV221638
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71855470|gb|DT004525.1|DT004525
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|161707299|gb|FC055150.1|FC055150
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
EST: gi|71858973|gb|DT008028.1|DT008028
EST:     ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTG                         ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT
genomic: ACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgatt ... ggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaatttcttgtattttgtatcaatttgtggcgttttctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG
                                     ttttctttg  CT-rich tract
               tattttgtatcaattt  TA-rich tract