1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tactgacatccaaatagatgctttggaatttttgaatcttagtttttgtgttaatatgcattagcatgggcttatattgatcatgtacatgcttgtgcagCAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAACTCCTGGTGCTCTCTTTCTGTCAGAGGGCTTTGTCAACTAGGAAATGGCTACTATCAGATGCA
species | Vitis vinifera |
transcript | Vv02s0241g00090.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCCTCTCTTCCATTCTCAACGATTGGTCACTCTATCATCTTCTCTAAG CAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAAC-CCTTGGTGCTCTEST: gi|351029521|gb|FQ436915.1|FQ436915
genomic: GAGCCTCTCTTCCATTCTCAACGATTGGTCACTCTATCATCTTCTCTAAGgtactttcca ... gcttgtgcagCAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAACTCC-TGGTGCTCT
EST: GAGCCTCTCTTCCATTCTCAACGATTGGTCACTCTATCATCTTCTCTAAG CAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAACTCCTGGTGCTCTC
genomic: GAGCCTCTCTTCCATTCTCAACGATTGGTCACTCTATCATCTTCTCTAAGgtactttcca ... gcttgtgcagCAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAACTCCTGGTGCTCTC
ttgtgttaatatgcattagcatgggcttatattgatcatgtacatgcttgtgcagCAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAACTCCTGGTGCTCTCTTTCTGTCAGAGGGCTTTGTCAACTAGGAAATGGCTACTATCAGATGCA
tattgat putative branch site (score: 3)
ttatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgacatccaaatagatgctttggaatttttgaatcttagtttttgtgttaatatgcattagcatgggcttatattgatcatgtacatgcttgtgcagCAATATCAAATCAAAATTCACAAGTCAGAGAGTTGAACTCCTGGTGCTCTCTTTCTGTCAGAGGGCTTTGTCAACTAGGAAATGGCTACTATCAGATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -acatcca
- - - - - - - - - tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtac