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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctcttatatactttgcataatcctgtgtgtggtttgtctcattagattattgacattggagactctgcccttctgggtaattgaatctgtgtggtttctttcttattggtcgcaattcaattattattgtgcagTGCTGGAACTGGCTTGTTATCAATGATGGCTGCAAGGGCAATGGGCTCTGGTGACTCAGTGGCGTGTCCTAGAACTGAGGGAATGGTAACAGCATGTGAG

Basic information

species Vitis vinifera
transcript Vv02s0154g00540.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G16570.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacctcttatatactttgcataatcctgtgtgtggtttgtctcattagattattgacattggagactctgcccttctgggtaattgaatctgtgtggtttctttcttattggtcgcaattcaattattattgtgcagTGCTGGAACTGGCTTGTTATCAATGATGGCTGCAAGGGCAATGGGCTCTGGTGACTCAGTGGCGTGTCCTAGAACTGAGGGAATGGTAACAGCATGTGAG----
                                ||   |  |||||||   | |||  |||   | |||     |   |   |  || || |  |  | |||   |  ||  ||      |  ||||  | | ||  |||||||||||||| ||| |||||||||||||||  || |||||| |    ||||| |||   | |  |  |      | | || |  ||    |   ||      
--------------------------------gttcgtcttctcattgagtcatttccat---aaacttgattcaattct-tggtttaaacactcagattt---tgataaaggagaatgtggaatttgtgt-gtatagTGCTGGAACTGGGTTGCTATCAATGATGGCTGTGAGAGCAATGAGA---GGTGATTCAAAAG-GAATGGTGACGGCGTGTGAGTCTTACTTACCGATGGTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaatctgtgtggtttctttcttattggtcgcaattcaattattattgtgcagTGCTGGAACTGGCTTGTTATCAATGATGGCTGCAAGGGCAATGGGCTCTGGTGACTCAGTGGCGTGTCCTAGAACTGAGGGAATGGTAACAGCATGTGAG
                                  aattcaattattattg  TA-rich tract