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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatttctgctttggatctgttttcgtcgaatatatcttttccgcgttttgatttctttttttcttttttaccatttctgttttcttcttggaaagTCGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTATCGAATAAGACCGAGAACCATGTAGTTTTCAAG

Basic information

species Vitis vinifera
transcript Vv02s0154g00500.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G15010.1 (Glycine max), 3'ss of exon 1
gtaagcatttctgctttggatctgttttcgtcgaatatatcttttccgcgttttgatttctttttttcttttttaccatttctgttttcttcttggaaagTCGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTATCGAATAAGACCGAGAACCATGTAGTTTTCAAG
|| ||  || |   ||    ||| || |  |   || | |  ||   | ||||  ||  |   | |    |||    ||||   | ||||| |     ||| || ||||||||||||||||| |||||||||||||| || ||||||||||| | | ||||||  ||||||
gtgagt-ttccattttcccttctcttcttcttttat-tctaattctagggtttccatcgcacctctctcatttccatattttattcttctttt-----agTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTAGCCTTCAAG

upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G04580.1 (Glycine max), 3'ss of exon 1
gtaagcatttctgctttggatctgttttcgtcgaatatatcttttccgcgttttgatttctttttttcttttttaccatttctgttttc-ttcttgga--aagTCGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTATCGAATAAGACCGAGAACCATGTAGTTTTCAAG
|| ||  ||||   |||   | | | ||| ||   |   ||| ||    | |||   |      | |||  ||| || ||||| | ||| ||| ||     ||| || ||||||||||||||||| |||||||||||||| || ||||||||||| | | |||| |  ||||||
gtgag--tttccattttcc-tttctcttcttcttcttcttctattgtagggtttccgtcgcacctctctcatttcccctttctttgttcgttcgtgcttttagTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTGGCCTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcgttttgatttctttttttcttttttaccatttctgttttcttcttggaaagTCGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTATCGAATAAGACCGAGAACCATGTAGTTTTCAAG
     ttttgat  putative branch site (score: 4)
           tttctttttttctttt  CT-rich tract
     ttttgatttctttttt  TA-rich tract