Sequence
atgc intronic sequence ATGC exonic sequence...agcatgttatttatctgcctttatgttcaagttatttaaataataattcatataaaaaggctaacgtgttttaattggttttaatttcaattgtacatagGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0109g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g35274.2 (Oryza sativa), 3'ss of exon 2
agcatgttatt-tatctgcctttatgtt--caagttatttaaataataattcatataaaaaggctaacgtgttttaattggttttaatttcaattgtacatagGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGA
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-atatttcacaatgattgttcttatgctactttgtctcttgtttttgtcttcagctacaataagctgtataatttcgctaactcttatttt--tcttaaatagGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAA
upper sequence: Vv02s0109g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G175676_T08 (Zea mays), 3'ss of exon 1
agcatgttatttatctgcctttatgttcaagttatttaaataataattcatataaaaaggctaacgtgttttaattggttttaatttcaattgtacatagGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGA-----------------------------------------------------
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---------------------------------------------------ttgccagacataatatattagtgttgtgtgttatttt--tcttaaataggtaacttggatgacaaggttcctgagagggttctgtatgaaattcttattcagGTAGGTCGTGTTGTAGACCTACACATACCTCGTGACAAGGAAACTAGCCGACCAAAAGGCTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAAT
upper sequence: Vv02s0109g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G175676_T01 (Zea mays), 3'ss of exon 1
agcatgttatttatctgcctttatgttcaagttatt-taaataataattcatataaaaaggc-taacgtgttttaattggttttaatttcaattgtacatagGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGA
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ctggtacaatttaaccaatgtggtcgttttgttattctacctcttgttttttgttgccagacataatatattagtgttgtgtgttatttt--tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCTCGTGACAAGGAAACTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcatataaaaaggctaacgtgttttaattggttttaatttcaattgtacatagGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGA
ttttaattggttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcatgttatttatctgcctttatgttcaagttatttaaataataattcatataaaaaggctaacgtgttttaattggttttaatttcaattgtacatagGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-gcatgtt
- - - - - - -tctgcct
- - - - - - - - - - - - - - - - - - -aaataat
- - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa