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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttcatgtctaatactggtcatagttgtaaaaggggatgatgtttctttgtcgagtacttttcaccatttttaatcataatttttcgggtttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACTGATCTTGCTCAAAACAGAAGGCTTCTATGTGGGAATTACTTATGTGGAT

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184751|gb|CF604105.1|CF604105
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAATATCAG                         AATGGCTAAAGCAAGATCAGGTCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|71856065|gb|DT005120.1|DT005120
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110719772|gb|EE095190.1|EE095190
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|22010091|gb|BQ795125.1|BQ795125
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|294964082|gb|GW837885.1|GW837885
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAATATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352768101|gb|FQ467240.1|FQ467240
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110698014|gb|EE075544.1|EE075544
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110685994|gb|EE063201.1|EE063201
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAATATCAG                         AATGGCTAAAGCAAGATCAGGTCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110687331|gb|EE064646.1|EE064646
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAATATCAG                         AATGGCTAAAGCAAGATCAGGTCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110701053|gb|EE078256.1|EE078256
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|28968205|gb|CB347238.1|CB347238
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGCATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|30322666|gb|CD005928.1|CD005928
EST:     GGTTTAGATTCTGTGGCGAAAAGAGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110698866|gb|EE076852.1|EE076852
EST:     GGTTCACATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|33410293|gb|CF215920.1|CF215920
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352782414|gb|FQ470317.1|FQ470317
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352767915|gb|FQ466124.1|FQ466124
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110720782|gb|EE097004.1|EE097004
EST:     GGTTTAGATTCTGCGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|30322537|gb|CD005799.1|CD005799
EST:     GGTTTAGATTCTGTGGCGAAAAGAGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110728091|gb|EE103366.1|EE103366
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|71858006|gb|DT007061.1|DT007061
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352764078|gb|FQ467648.1|FQ467648
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352763755|gb|FQ473458.1|FQ473458
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110698827|gb|EE076773.1|EE076773
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352781577|gb|FQ468875.1|FQ468875
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110698396|gb|EE075846.1|EE075846
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110710999|gb|EE087696.1|EE087696
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|71856420|gb|DT005475.1|DT005475
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|37188407|gb|CF607756.1|CF607756
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|33408383|gb|CF214010.1|CF214010
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|294964094|gb|GW837897.1|GW837897
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|161714707|gb|FC062675.1|FC062675
EST:     TTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGTATTCTGGCATTTTCACT
genomic: TTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110698242|gb|EE075557.1|EE075557
EST:     GGCTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110721907|gb|EE097675.1|EE097675
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110730159|gb|EE106923.1|EE106923
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|34548179|gb|CF516411.1|CF516411
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|71857920|gb|DT006975.1|DT006975
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|110690730|gb|EE068155.1|EE068155
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAATATCAG                         AATGGCTAAAGCAAGATCAGGTCACTGGTTAAGCATTCTGGCATTTGCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
EST: gi|352778255|gb|FQ465565.1|FQ465565
EST:     GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAG                         AATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT
genomic: GGTTTAGATTCTGTGGCGAAAAGGGGAGTCTTCTCCTCTCGCAGTATCAGgtggtttact ... tttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgtcgagtacttttcaccatttttaatcataatttttcgggtttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACTGATCTTGCTCAAAACAGAAGGCTTCTATGTGGGAATTACTTATGTGGAT
                        ttttaat  putative branch site (score: 3)
                                             ttttt  putative PPT
              ttttcaccatttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttcatgtctaatactggtcatagttgtaaaaggggatgatgtttctttgtcgagtacttttcaccatttttaatcataatttttcgggtttttggcagAATGGCTAAAGCAAGAACAGGCCACTGGTTAAGCATTCTGGCATTTTCACTGATCTTGCTCAAAACAGAAGGCTTCTATGTGGGAATTACTTATGTGGAT

- -tcatgtc
- - - - - - atactgg
- - - - - - - - - - - - - -gtaaaag