1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctttgcttaattatgccatagattattaacttcttttttgttctttatcaatgcgtctaaaagtattctatgcaaattcttctttcttctttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCATCTGAATGTCCCTTTGATGAGCAGGACATTCAGAAATGCCCATTCTTA
species | Vitis vinifera |
transcript | Vv02s0033g01160.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|161718564|gb|FC069317.1|FC069317
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|352791235|gb|FQ477520.1|FQ477520
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: ACCTGCTGCTCAGAACTCCCACCATTTCTTTCATCCAATCCCCATTTCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGCEST: gi|110726338|gb|EE102030.1|EE102030
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: ACCTGCTGCTCAGAACTCCAACCATTTCTTTCATCTAATCCCCATTTCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGCEST: gi|352795000|gb|FQ477110.1|FQ477110
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: ACCTGCTGCTCAGAACTCCAACCATTTCTTTCATCCAATCCCCATTTCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGCEST: gi|352773280|gb|FQ470867.1|FQ470867
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: ACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110713285|gb|EE089070.1|EE089070
genomic: ACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|71860480|gb|DT009535.1|DT009535
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTTATCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGCEST: gi|110698939|gb|EE077013.1|EE077013
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCACAACTCCAACCATTTCTTTCGCCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110712750|gb|EE088067.1|EE088067
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110727083|gb|EE103459.1|EE103459
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: ACCTGCTGCTCAGAACTCCAACCATTTCTTTCATCTAATCCCCATTTCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGCEST: gi|352765035|gb|FQ473683.1|FQ473683
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110712841|gb|EE088241.1|EE088241
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|161707316|gb|FC056844.1|FC056844
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110711968|gb|EE089049.1|EE089049
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110711233|gb|EE087512.1|EE087512
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110711111|gb|EE087284.1|EE087284
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|110711472|gb|EE087993.1|EE087993
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCEST: gi|294966579|gb|GW837714.1|GW837714
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
tatcaatgcgtctaaaagtattctatgcaaattcttctttcttctttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCATCTGAATGTCCCTTTGATGAGCAGGACATTCAGAAATGCCCATTCTTA
gtctaaa putative branch site (score: 3)
ttcttctttcttcttt putative PPT
taaaagtattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgcttaattatgccatagattattaacttcttttttgttctttatcaatgcgtctaaaagtattctatgcaaattcttctttcttctttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGCATCTGAATGTCCCTTTGATGAGCAGGACATTCAGAAATGCCCATTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - -tatgcca
- - - - - - - - - - - - - - - - - - - - - - - -tcaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgca