Sequence
atgc intronic sequence ATGC exonic sequence...tgattgctcttgatcggcctttttacaactagaaacagcaatgcaataatgagattttcatcagtaactatggctgaccatattttttcccttttttcagCTTAGTTCCCTTGCCAGAAGGAGCTCTCTGCTTGATTGCTGCCACAGCGTTCTCTGCAGAGTATTTCCTATTCTATTTCCATTCAACAACACCATAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0033g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G35110.1 (Glycine max), 3'ss of exon 2
tgattgctcttgatcggcctttttacaactagaaacagcaatgca---ataatgagattttcatcagtaactatggctgaccatattttttcccttttttcagCTTAGTTCCCTTGCCAGAAGGAGCTCTCTGCTTGATTGCTGCCACAGCGTTCTCTGCAGAGTATTTCCTATTCTATTTCCATTCAACAACACCATAAAGG-
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--taggcaggaaacctaaattaagacaactagcaattcccttccaagcatcttagtatatatcttcctaaccatgtcct-ctttgtgacattttcttacacagATTTCTTCCCTTGCCAGAAGGTGCTCTTTGTTTGCTTGCTGCCTCAGCATTCACTGCAGAGTACCTTCTTTTCTACTTCCATTCAACAACAC-ACAAGGGC
upper sequence: Vv02s0033g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G34530.1 (Glycine max), 3'ss of exon 2
tgattgctcttgatcggcctttttacaactagaaacagcaatgcaataatgagatttt-catcag--taactatggctgaccatattttttcccttttttcagCTTAGTTCCCTTGCCAGAAGGAGCTCTCTGCTTGATTGCTGCCACAGCGTTCTCTGCAGAGTATTTCCTATTCTATTTCCATTCAACAACACCATAAAGG-
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--taggcatgaaacctaaattaaaacaactaccaattacctttcaagcatcttattatacatcttcctaaccatttccc-ctttgtgactttttgttgcacagATTTCTTCCCTTGCCAGAAGGTGCTCTTTGTTTGCTTGCTGCCTCAGCATTCACTGCAGAGTACCTTCTTTTCTACTTCCATTCAACAACAC-ACAAGGGC
upper sequence: Vv02s0033g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G17670.1 (Glycine max), 3'ss of exon 2
--tgattgctcttgatcggcctttttacaactagaaacagcaatgcaataatgagattttcatcagtaactatggctgaccatattttttcccttttttcagCTTAGTTCCCTTGCCAGAAGGAGCTCTCTGCTTGATTGCTGCCACAGCGTTCTCTGCAGAGTATTTCCTATTCTATTTCCATTCAACAACACCATAAAGG-
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cagacctatgtttccctaaatcttattctattagttaaagtgctgcttttttaacctgttgcttcttttccatt-ctcattttcttcattctcttatgcagACGTC-TTCCCTTGCCTGAAAATGCTCTTTGTTTGATTGCTGCTGCAGCATTCTGTGCAGAGTATCTTCTATTCTACTTTCACTCAACAACAC-ACAAAGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataatgagattttcatcagtaactatggctgaccatattttttcccttttttcagCTTAGTTCCCTTGCCAGAAGGAGCTCTCTGCTTGATTGCTGCCACAGCGTTCTCTGCAGAGTATTTCCTATTCTATTTCCATTCAACAACACCATAAAGG
ccatattttttccctt CT-rich tract
atatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgattgctcttgatcggcctttttacaactagaaacagcaatgcaataatgagattttcatcagtaactatggctgaccatattttttcccttttttcagCTTAGTTCCCTTGCCAGAAGGAGCTCTCTGCTTGATTGCTGCCACAGCGTTCTCTGCAGAGTATTTCCTATTCTATTTCCATTCAACAACACCATAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -gctcttg
- - - - - - - - - - - - - - - -gaaacag
- - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - -aatgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacca