Sequence
atgc intronic sequence ATGC exonic sequencegtgaacatctaaatgccttctagtctcctttgtttactttatgcattctaaatagagagatgatttggtttcaggcctttgctaacaactgcctatcttttgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G01680.1 (Glycine max), 3'ss of exon 4
----gtgaacatctaa---atgccttctagtctcctttgtttactttatgcattctaaatagagagatgatttggtttcaggcctttgctaaca-----actgccta-------------tcttt-tgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
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gtagttaattatataacatacgctttttaaaattttttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatatagtacttactttgaagggttttctttgtgcagGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTC
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 3
----gtgaacatctaa---atgccttctagtctcctttgtttactttatgcattctaaatagagagatgatttggtttcaggcctttgctaaca-----actgcctatcttt---------------tgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
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gtagttaattatataacatacgctttttaaaattatttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatatagtacttacttttgaagggttttctttgtgcagGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTC
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G42800.1 (Glycine max), 3'ss of exon 2
gtgaacatctaaatgccttctagtctcc---tttgtttactttatgcattc-taaatagag--agatgatttggtttcaggc-ctttgctaacaactgcctatcttttgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
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gtaagcctagtactaactacttttttctgagtttgctcattagatatgtttattgatggagtcagaggaactacatctatgctcatcggtgccatttttattttttttgcagGTCATTGCGCTTTCTCTTTCAACATGGCTTTCCTGGTTTCTGGCTGGAAAGTTCCATGCATACCCAAAATCTTGGATACCATCTTCCACAAACAGCTTTG
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgaaca-tctaaatgccttctagtctcctttgtttactttatgcattctaaatagagagatgatttggtttcaggcctttgctaacaactgcctatcttttgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
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gtgagtaatctgaccagttgataaacaaatt-atttagtcttt----------tagaggcacaactattttttaaac--tcactgg--attataa---tgttgaagGTAATTTTCCTCTCGTTCTCAACTTGGCTTGCCTGGTTCTTAGCTGGGAAACTGCATTGGTACCCTGAATCCTGGATACCTTCTTCGATGGATAGCTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagagagatgatttggtttcaggcctttgctaacaactgcctatcttttgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
tgctaac putative branch site (score: 1)
cctatctttt putative PPT
tatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaacatctaaatgccttctagtctcctttgtttactttatgcattctaaatagagagatgatttggtttcaggcctttgctaacaactgcctatcttttgcagGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA