Sequence
atgc intronic sequence ATGC exonic sequence...tacttcttgttgcatgtggtgaagcaacctcttctattcctttcttaagacattaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G02580.1 (Glycine max), 3'ss of exon 1
-------tacttcttgttgcatgtg-gtgaagcaacctcttctattcctttcttaagacattaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
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gtatatatatctttagattcatgagtgctaagtgcctcactttattcccccccccccccccccccc---tgcaattttggttctg----atttctattttgttct-agGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGCCACTGCTTTTGAGAAG
upper sequence: Vv02s0025g03560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G42890.1 (Glycine max), 3'ss of exon 1
tacttcttgt-tgcatgtggtgaagcaacctcttctattcctttcttaagacattaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
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gattatatatatatatatatttagatt-catgagtgcttcacgcctcactttatcccccccagcccctgcaattttggttctgatttctattttgttctagGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGCCAGTGCTTTTGAGAAG
upper sequence: Vv02s0025g03560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ11616 (Selaginella moellendorffii), 3'ss of exon 1
tacttcttgttgcatgtggtgaagcaacctcttctattcctttcttaagaca-ttaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
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--------------------------------------------gtatgctaactcgttttgtgttctctgggtactg-attacttccc-------tgcagGGGAGAGCCTAAATGCTGGTATAGTGTACCTGGCAGTGCTTACGACGCGTTTGAAGAG
upper sequence: Vv02s0025g03560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ09775 (Selaginella moellendorffii), 3'ss of exon 1
tacttcttgttgcatgtggtgaagcaacctcttctattcctttcttaagacattaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
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---------------------------------------------------gtatgctaactggttttgtgttctctgggtactgattacttccctgcagGGGAGAGCCTAAATGCTGGTATAGTGTACCTGGCAGTGCTTACGACGCGTTTGAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagacattaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
cattaat putative branch site (score: 3)
tgttctc putative PPT
attaattaaatgct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacttcttgttgcatgtggtgaagcaacctcttctattcctttcttaagacattaattaaatgctcattgggttttgcactgcttctcatatgttctcagGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - -cttgttg
- - - - - - catgtgg
- - - - - - - - - - gaagcaa
- - - - - - - - - - - - - -cctcttc
- - - - - - - - - - - - - - - - - - -tcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca