Sequence
atgc intronic sequence ATGC exonic sequence...taattagtctcaccataatgcatatagattgcactcatgcttggttatagatattccttggactttacaagttctaacatgattctgattttgcatatagGGAGCCAAAGAGAGAGTGCCTGCATTGACCATAACAAGGGTCGAGGAGGGACAGTATGCAGTTGATTTTCATGCACAGTTATCCACATTACAAGCATTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37820.1 (Glycine max), 3'ss of exon 3
-------taattagtctcaccataatgcatatagattgcactcatgcttggttatagatattccttggactttacaagttctaacatgattctgatttt---gcatatagGGAGCCAAAGAGAGAGTGCCTGCATTGACCATAACAAGGGTCGAGGAGGGACAGTATGCAGTTGATTTTCATGCACAGTTATCCACATTACAAGCATTCT
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tacagctttctttgcttc-cttcagtgt-taccattttaact--tgcttcttta-agagattgttattgtttt-----ttctaatacatgtctgaccttttggtgcacagGGAGCAAAAGGAAGCAGTCCTACCTTCAGCATGACAAGAATTGAAGAGGGGCATTATGCTGTTGATTTTCATGCACAATTATCCACTTTACAAGCATTCT
upper sequence: Vv02s0025g03500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G01780.1 (Glycine max), 3'ss of exon 5
------taattagtctcaccataatgcatatagattgcactcatgcttggttatagatattccttggactttacaagttctaacatgattctgattttgcatatagGGAGCCAAAGAGAGAGTGCCTGCATTGACCATAACAAGGGTCGAGGAGGGACAGTATGCAGTTGATTTTCATGCACAGTTATCCACATTACAAGCATTCT
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ctttctctgctttcttcacttcagtgt-taccattttaact--tgcttctttatgagattgttattgttttttctaatccatgtctgacctt---ttggtgcacagGGAGCAAAAGGAAGCAGTCCTACCTTCAGCATGACAAGAATTGAAGAGGGGCATTATGCTGTTGATTTTCATGCACAATTATCCACATTACAAACATTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatagatattccttggactttacaagttctaacatgattctgattttgcatatagGGAGCCAAAGAGAGAGTGCCTGCATTGACCATAACAAGGGTCGAGGAGGGACAGTATGCAGTTGATTTTCATGCACAGTTATCCACATTACAAGCATTCT
tttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taattagtctcaccataatgcatatagattgcactcatgcttggttatagatattccttggactttacaagttctaacatgattctgattttgcatatagGGAGCCAAAGAGAGAGTGCCTGCATTGACCATAACAAGGGTCGAGGAGGGACAGTATGCAGTTGATTTTCATGCACAGTTATCCACATTACAAGCATTCT
- - - - ctcacca
- - - - - - - - aatgcat
- - - - - - - - - - - - - - - - -ctcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt