Sequence
atgc intronic sequence ATGC exonic sequencegtacgttgtttcttataagaactgctggtcacttgtcttaggtgagcttgttgaaatggccttgttaaactggtggggaaccttttttcagGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G080842_T01 (Zea mays), 3'ss of exon 2
-------------------------gtacgttgt-ttcttataagaactgctggtcacttgtcttaggtgagcttgttgaaatggcct-tgttaaactggtggg-gaaccttttttcagGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTT
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gtaatgctcaatgagagcaatttccacaacctatgttttctttccaatttctatgcattgttaccctttgaga--actataattccctatattaatttagtgattgatggttagtaaagGTGTTCTGGGGTTATATGGAGGACTTGCTAGCAAACTTGCTTGTTCTGCACCAATTTCTGCAATTTATACCTTAACTTATGAAACAGTGAAGGGGGCTCT
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37810.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------gtacgttgtttcttataagaactgctggtcacttgtcttaggtgagcttgttgaaatggccttgttaaactggtggggaaccttttttcagGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTT
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gttggttttgtaagagaaattatgttcttgctagatatctgtgtagcttatatgtctcatttcttttagattaactttctctcttgaattaaatactctact--agatggctccttcatagagttgatggac-taatttcagGTTTGCTTGGACTGTATCGTGGAATTACCACAAACATTGCATGTTCAGCTCCAATTTCTGCAGTTTATACTTTCTCCTATGAATCAGTTAAAGCAGCTTT
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G01790.1 (Glycine max), 3'ss of exon 7
---------------------------------------------------gtacgttgtttcttataagaactgctggtcacttgtcttaggtgagcttgttgaaatggccttgttaaactggtggggaaccttttttcagGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTT
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gttggctttgcaagagaaattatgttcttgctagatatctgtgcagcttatatgtctcgtttcatttagattaactttctctcttgaattaaata--ctccactagatggctccttcatagagttgatggac-taatttcagGTTTGCTTGGACTGTATCGTGGAATTACCACAAACATTGCATGTTCAGCTCCAATTTCTGCAGTTTATACTTTCTCCTATGAATCAGTTAAGGCAGCTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaggtgagcttgttgaaatggccttgttaaactggtggggaaccttttttcagGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTT
ccttttttc CT-rich tract
ttgttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgttgtttcttataagaactgctggtcacttgtcttaggtgagcttgttgaaatggccttgttaaactggtggggaaccttttttcagGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT