1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagcccaactatttactctcctgtgctttcacttgaacaaatggggaaaactgcaatatatcatatcatatttcagtgctcatattcgatgtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGGTGTACATGTCATTATGGCGGTAAGGAATGTGGATGCTGGTAGGAATGT
species | Vitis vinifera |
transcript | Vv02s0025g03380.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGEST: gi|161715967|gb|FC068756.1|FC068756
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGEST: gi|110373040|gb|EC937247.1|EC937247
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGCTCTTGCATTGCATGEST: gi|71857391|gb|DT006446.1|DT006446
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGEST: gi|110394584|gb|EC959749.1|EC959749
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGEST: gi|71868300|gb|DT017355.1|DT017355
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGEST: gi|110712661|gb|EE087900.1|EE087900
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCGCTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGEST: gi|161706209|gb|FC055419.1|FC055419
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
EST: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAG GAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
genomic: GGAAGTTGCTCAAGGAATTGATGGAAATGGCCTCACTGCTGTTGTTACAGgtctttttcc ... gtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATG
gaaaactgcaatatatcatatcatatttcagtgctcatattcgatgtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGGTGTACATGTCATTATGGCGGTAAGGAATGTGGATGCTGGTAGGAATGT
aatatatcatatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcccaactatttactctcctgtgctttcacttgaacaaatggggaaaactgcaatatatcatatcatatttcagtgctcatattcgatgtaatttcagGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGGTGTACATGTCATTATGGCGGTAAGGAATGTGGATGCTGGTAGGAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - ccaacta
- - - - - - - -ctctcct
- - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - -gggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - ctgcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcata