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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcatattcagtgctctctaataaatagggaattgctttgattttgtgtgctttctaacagctcaagctttaggagcatggtttaataatacttgccggtatctcaatttctttggcttaactttcctgcctgtataagatttaagattgttaagTTGCAGAGATGGTCTTGGCCCCTACTGAAAAGGTGGTTTTAGGCTCAATAGCCTTTGCAATCTTCTGGGTTTTGGCAGTGTTCCCAGCAGTTCCTTTTCT

Basic information

species Vitis vinifera
transcript Vv02s0025g03310.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcaatttctttggcttaactttcctgcctgtataagatttaagattgttaagTTGCAGAGATGGTCTTGGCCCCTACTGAAAAGGTGGTTTTAGGCTCAATAGCCTTTGCAATCTTCTGGGTTTTGGCAGTGTTCCCAGCAGTTCCTTTTCT
               gcttaac  putative branch site (score: 3)
                                 tataagatttaagatt  TA-rich tract