1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caaattaaggggactgcatggggtttatgtgggagaattttgatttttttaattccttattatcattagtgaaagtggtgcttatagtggatggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTCAGAGCAAGAAGCAATGGAATGCGAGTAGTTGTGTTCAATAGCCGTGGCT
species | Vitis vinifera |
transcript | Vv02s0025g02550.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGGCATTTGCTGGTCEST: gi|161707677|gb|FC057417.1|FC057417
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGEST: gi|38516575|gb|CF983750.1|CF983750
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAG
EST: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTCEST: gi|37186405|gb|CF605758.1|CF605758
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTCEST: gi|38516609|gb|CF983784.1|CF983784
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGGCATATGCTGGTCEST: gi|71864129|gb|DT013184.1|DT013184
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGGCATTTGCTGGTCEST: gi|71866312|gb|DT015367.1|DT015367
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGGCATTTGCTGGTCEST: gi|110372983|gb|EC937181.1|EC937181
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTG CCAGGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGGCATTTGCTGGTCEST: gi|349825263|gb|FQ417984.1|FQ417984
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
EST: CCGGTGACGACCGTCAGCTTGGAGCCGACTCCCCGGTTCTCATTCTACT- ---GGTCTAACAGGAGGGAGTGAAGACAGTTATGTGAGGCATTTGCTGGTC
genomic: CCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGgtaatttctt ... atggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTC
tttttaattccttattatcattagtgaaagtggtgcttatagtggatggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTCAGAGCAAGAAGCAATGGAATGCGAGTAGTTGTGTTCAATAGCCGTGGCT
ttttaat putative branch site (score: 3)
ttattatcattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattaaggggactgcatggggtttatgtgggagaattttgatttttttaattccttattatcattagtgaaagtggtgcttatagtggatggttgcagCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTCAGAGCAAGAAGCAATGGAATGCGAGTAGTTGTGTTCAATAGCCGTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-aaattaa
- - - - - - - -gcatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtggtg