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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaggaatgaagacagctgaaatttattttttgtgaagttataatttgtttaggtgtttggaattactatatggtttggttattttgttgtcattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA

Basic information

species Vitis vinifera
transcript Vv02s0025g02010.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188612|gb|CF607961.1|CF607961
EST:     TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|349816270|gb|FQ399380.1|FQ399380
EST:     TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|30298118|gb|CB974912.1|CB974912
EST:     TCGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTTTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|161716840|gb|FC064955.1|FC064955
EST:     TCGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTTTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|110718356|gb|EE095093.1|EE095093
EST:     TCGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|110731735|gb|EE106407.1|EE106407
EST:     CCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: CCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|110707571|gb|EE084124.1|EE084124
EST:     TCGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|110374493|gb|EC939283.1|EC939283
EST:     TCGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|351044575|gb|FQ443106.1|FQ443106
EST:     TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|351033177|gb|FQ461949.1|FQ461949
EST:     TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
EST: gi|110410923|gb|EC976617.1|EC976617
EST:     TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAG                         GTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC
genomic: TTGTGAGGAGCGATTTTGACACTTGCACCAAACTCCTCTCCCAACTCAAGgtatgaaacc ... cattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttaggtgtttggaattactatatggtttggttattttgttgtcattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA
               aattactatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaggaatgaagacagctgaaatttattttttgtgaagttataatttgtttaggtgtttggaattactatatggtttggttattttgttgtcattatgcagGTTTTGCTGACGGAATTTAGAAGTCTTCCACCATTGTTTGAGGACTCCCCCAATGCAGTTCATGAGTTGAAAATAGCAA

- - - -gaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg