1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtagaggcaaattgtgttgtataagcgattcattgaactagaatcagaatttgtttgttgtttgatggccttatctggaaattgtgctttcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
species | Vitis vinifera |
transcript | Vv02s0025g01580.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110697145|gb|EE073879.1|EE073879
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|161708830|gb|FC060896.1|FC060896
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110727068|gb|EE103430.1|EE103430
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110728721|gb|EE104535.1|EE104535
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110732185|gb|EE107249.1|EE107249
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|71860637|gb|DT009692.1|DT009692
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|71883897|gb|DT032952.1|DT032952
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110727091|gb|EE103475.1|EE103475
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|30125545|gb|CB910884.1|CB910884
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110708350|gb|EE085791.1|EE085791
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|71861707|gb|DT010762.1|DT010762
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|110709164|gb|EE084386.1|EE084386
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|71856066|gb|DT005121.1|DT005121
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAAEST: gi|30126470|gb|CB911809.1|CB911809
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
cagaatttgtttgttgtttgatggccttatctggaaattgtgctttcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
gtttgat putative branch site (score: 5)
tgctttc putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagaggcaaattgtgttgtataagcgattcattgaactagaatcagaatttgtttgttgtttgatggccttatctggaaattgtgctttcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
- - -aggcaaa
- - - - - - - - - - - - - - - - - - - - - aatcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaattg