Sequence
atgc intronic sequence ATGC exonic sequence...attcatagcaagttttggcatgacataaggataaaaatatttagtcattgtcttgtgtcctttgatatagtacgtataagtctaacaatatgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATTTATCTTGGATTCAGCAAAGAATGAGTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g00960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37160.1 (Glycine max), 3'ss of exon 3
attcatagcaagttttggcatgacataaggataaaaatatttagtc-attgtcttgtgtcctttgatata-gtac-----gtataagtctaacaatatgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATTTATCTTGGATTCAGCAAAGAATGAGTATG
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------tgaaacctttgtaatgctatattc-tgatattattttatggactaccttctactagtaagaatgtggacttgggatataacgtaagggctgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCATTTGGTAGAGCATGAGCTGGATTCAGCTGCCCAGGAGTATG
upper sequence: Vv02s0025g00960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G02420.1 (Glycine max), 3'ss of exon 3
------attcata--gcaagttttggcatgacataaggataaaaatatttagtcattgtcttgtgtcctttgatatagtacgtataagtctaacaatatgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATTTATCTTGGATTCAGCAAAGAATGAGTATG
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tcaatccttcataatgcctatattctgatgtcattttatggactaccttctactaagaatgtg-gacttttgggatataacataagggc-------tgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGCATGTGCTGGATTCAGCTGCACAGGAGTATG
upper sequence: Vv02s0025g00960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 3
attcatagcaagttttggcatgacataaggataaaaatatttagtca-ttgtcttgtgtcctttgatatagtacgtataagtctaacaata----tgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATTTATCTTGGATTCAGCAAAGAATGAGTATG
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-----tttcaatcctttgtaatgctatattttgctattattttatgaactaacttccatgcttaagcatgtggactaggaagataatataagggctgtgttgcagTGTTTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAACGTGCTGGATTCAGCTGCTCAGGAGTATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254914734|gb|GR906835.1|GR906835EST: GACATGATCACAATGTCTATAAAAGGCTTCTGAAAGATCTTATGGTTCAG AATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GACATGATCACAATGTCTATAAAAGGCTTCTGAAAGATCTTATGGTTCAGgtcagtataa ... tgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattgtcttgtgtcctttgatatagtacgtataagtctaacaatatgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATTTATCTTGGATTCAGCAAAGAATGAGTATG
gtctaac putative branch site (score: 2)
tttgatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcatagcaagttttggcatgacataaggataaaaatatttagtcattgtcttgtgtcctttgatatagtacgtataagtctaacaatatgtgtcgcagAATTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATTTATCTTGGATTCAGCAAAGAATGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- -catagca
- - - - - - - - -gcatgac
- - - - - - - - - - - - ataagga
- - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata