Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaaatgggtgcctgttccacaccgtgggtccatgtgtaatgttttattggaatttgagggaaaagctctaatttagttctatttgctcttttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTGGTGGTGCAACTGCAGTATGGATTCTATTCGAGTTGCTTGAATACCACCT

Basic information

species Vitis vinifera
transcript Vv02s0025g00640.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G159388_T01 (Zea mays), 3'ss of exon 1
ccaaatgggt--gcctgttccacaccgtgggtccatgtgtaatgt---tttattggaatttgagggaaaagctctaatttagttctatttgctcttttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTGGTGGTGCAACTGCAGTATGGATTCTATTCGAGTTGCTTGAATACCACCT
    || | |   | || || |     || |    ||||  |  |   |   ||    | ||       | |   |||     |     | |||| || ||||||||||||||||  |  ||||||||||||| || || || || ||||| ||||||||||| || ||| | |||||  |||| || |||||||  ||||| ||
---gattgataaacttgatcgatgtaatgagaat-tgtgagacctaaataccttatcgtctgtcattgtacccacaatactcattaccgttctctatt-ttgtagCTGCTGATGTGTTCTTGTGGAGGAACAAGAACATCTCTGCTGGAGTACTTGGTGGTGCCACAGCAATCTGGATCTTATTTGAATTGCTTGGCTACCATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731085|gb|EE108905.1|EE108905
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351056273|gb|FQ453735.1|FQ453735
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|71873398|gb|DT022453.1|DT022453
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349832964|gb|FQ416342.1|FQ416342
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|37184774|gb|CF604128.1|CF604128
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110723518|gb|EE100924.1|EE100924
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|71874793|gb|DT023848.1|DT023848
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349828010|gb|FQ422878.1|FQ422878
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110371909|gb|EC936044.1|EC936044
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110684721|gb|EE062324.1|EE062324
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110691625|gb|EE069943.1|EE069943
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349826619|gb|FQ418710.1|FQ418710
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|161711989|gb|FC059581.1|FC059581
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110689474|gb|EE065740.1|EE065740
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110372297|gb|EC936450.1|EC936450
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349828802|gb|FQ419135.1|FQ419135
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|37190329|gb|CF609678.1|CF609678
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGCTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349820518|gb|FQ404013.1|FQ404013
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGCCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110695959|gb|EE074568.1|EE074568
EST:     CAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: CAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110730633|gb|EE107933.1|EE107933
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|294966775|gb|GW837794.1|GW837794
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351023646|gb|FQ448197.1|FQ448197
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|71873938|gb|DT022993.1|DT022993
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349823560|gb|FQ414970.1|FQ414970
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110693223|gb|EE069264.1|EE069264
EST:     CTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: CTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351053564|gb|FQ462639.1|FQ462639
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|30253114|gb|CB970665.1|CB970665
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110712849|gb|EE088256.1|EE088256
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351016650|gb|FQ424077.1|FQ424077
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|77586321|gb|DV222263.1|DV222263
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|27582357|gb|CB005052.1|CB005052
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110371532|gb|EC935632.1|EC935632
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349821472|gb|FQ404483.1|FQ404483
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGCCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110397930|gb|EC963929.1|EC963929
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351033859|gb|FQ447897.1|FQ447897
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110721244|gb|EE098018.1|EE098018
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110410031|gb|EC975707.1|EC975707
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110706191|gb|EE081511.1|EE081511
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110718326|gb|EE095031.1|EE095031
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGTGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|34548102|gb|CF516334.1|CF516334
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAGGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349824318|gb|FQ417689.1|FQ417689
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|33402635|gb|CF208262.1|CF208262
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110395723|gb|EC961393.1|EC961393
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110697469|gb|EE074483.1|EE074483
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351041683|gb|FQ455893.1|FQ455893
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110690299|gb|EE067279.1|EE067279
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349827000|gb|FQ419091.1|FQ419091
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110387135|gb|EC951780.1|EC951780
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110692075|gb|EE070905.1|EE070905
EST:     CTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: CTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351033925|gb|FQ462980.1|FQ462980
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|349811034|gb|FQ406022.1|FQ406022
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGCCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351013192|gb|FQ424897.1|FQ424897
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|161713780|gb|FC063780.1|FC063780
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|30296772|gb|CB973566.1|CB973566
EST:     TCGGCAGGG-AAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: TCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351026162|gb|FQ428174.1|FQ428174
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|351012766|gb|FQ430329.1|FQ430329
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|161720413|gb|FC069855.1|FC069855
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110733104|gb|EE109003.1|EE109003
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|30252458|gb|CB970009.1|CB970009
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|352798976|gb|FQ480825.1|FQ480825
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
EST: gi|110707907|gb|EE084844.1|EE084844
EST:     GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAAC                         CTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG
genomic: GATCTTCGGCAGGGAAAAGCCTGTTCACAAGGTTCTCGGCGGTGGAAAACgtacgtaaag ... tttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattggaatttgagggaaaagctctaatttagttctatttgctcttttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTGGTGGTGCAACTGCAGTATGGATTCTATTCGAGTTGCTTGAATACCACCT
                     ctctaat  putative branch site (score: 3)
                                ttctatttgctctttt  putative PPT
                        taatttagttctattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccaaatgggtgcctgttccacaccgtgggtccatgtgtaatgttttattggaatttgagggaaaagctctaatttagttctatttgctcttttgttgtagCTGCTGATGTTGTTCTGTGGAGGAACAAAAAGATTTCGGCAGGAGTGCTTGGTGGTGCAACTGCAGTATGGATTCTATTCGAGTTGCTTGAATACCACCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
ccaaatg
- - - - -tgcctgt
- - - - - - - - -ccacacc
- - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaaa