Sequence
atgc intronic sequence ATGC exonic sequencegtctcacctctctctctctctctctctccattctcttacacaaaccacacatcccacacatctgaatataagctgaaaactgaaatggttttttcttttcttttcttttctttctggtcgaagGGCTACAAAGATGCGGCAAAAGCTGCCGCCTGAGGTGGATCAACTACTTGAGACCCGATATCAGAAGAGGGAGGTTCACCCCAGAGGAGGAGAAACTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G02080.1 (Glycine max), 3'ss of exon 1
gtctcacctctctctctctctctctctccattctcttacacaaaccacacatcccacacatctgaatataagctgaaaactgaaatggttttttcttttcttttcttttctttctggtcgaagGGCTACAAAGATGCGGCAAAAGCTGCCGCCTGAGGTGGATCAACTACTTGAGACCCGATATCAGAAGAGGGAGGTTCACCCCAGAGGAGGAGAAACTGAT
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----------------tgatgatagaactgccctcatttttaatgattaaatttgaaggatacgagt-----cttgtacatgtaatatttctcatatatctgtgcttaattggcttttt--agGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGGAGGTTTACACCTGAGGAGGAGAAGTTAAT
upper sequence: Vv02s0025g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37460.1 (Glycine max), 3'ss of exon 1
gtctcacctctctctctctctctctctccattctcttacacaaaccacacatcccacacatctgaatataagctgaaaactgaaatggttttttcttttcttttcttttctttct---ggtcgaagGGCTACAAAGATGCGGCAAAAGCTGCCGCCTGAGGTGGATCAACTACTTGAGACCCGATATCAGAAGAGGGAGGTTCACCCCAGAGGAGGAGAAACTGAT
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--------------------------ttgatgatgatagaactgccctcaatttcaatgattaaatttgaagcgtacaagtcttgtacatgtaatatttctcatctgtgcttaattgggtttttagGGCTTCTAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagctgaaaactgaaatggttttttcttttcttttcttttctttctggtcgaagGGCTACAAAGATGCGGCAAAAGCTGCCGCCTGAGGTGGATCAACTACTTGAGACCCGATATCAGAAGAGGGAGGTTCACCCCAGAGGAGGAGAAACTGAT
tggttttttcttttct CT-rich tract
ttttttcttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctcacctctctctctctctctctctccattctcttacacaaaccacacatcccacacatctgaatataagctgaaaactgaaatggttttttcttttcttttcttttctttctggtcgaagGGCTACAAAGATGCGGCAAAAGCTGCCGCCTGAGGTGGATCAACTACTTGAGACCCGATATCAGAAGAGGGAGGTTCACCCCAGAGGAGGAGAAACTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA