Sequence
atgc intronic sequence ATGC exonic sequence...tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatcaacagaagggaggataacttgattcctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 3'ss of exon 1
----------tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatcaacagaagggaggataacttgattcctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
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gtgggggaaatgggtcacggcggcccaaaaatgt----tatggtttgactgcttgagtagatgtgattatattg-tagtagtaat-----tttgtttttcctatttgtagCGCGGCTGTTAACTCGGAGAACGGCGAGGAAGTTGCCATCAAGAAGATTGGCAATGCATTCGACAACCATATCGATGCCAAGCGGACACTGAGAGAAATC
upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G02060.1 (Glycine max), 3'ss of exon 1
tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatcaaca--gaagggaggataacttgatt--cctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
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------gtaagtgttttatttccttcttcaa-atttaaatg-cata-aatttgatatttgcttagaaatgattttatgttcacttgaacaatgtttcttttcagTGCTGCTGTTAATTCCGAAACACACGAACAAGTTGCAATCAAGAAGATCGGCAACGCATTTGACAATATAATTGATGCTAAGAGAACATTGAGAGAAATC
upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G43100.1 (Glycine max), 3'ss of exon 1
tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatcaacagaagggaggataacttgattcctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
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----------gtatctatccatgcgttttccctttt-cttctctcttatacttcaatatcctcctcact------gtttgttc--tttctcacttctcagTGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGGTAACGCCTTTGACAACATCATTGACGCTAAACGAACTTTGAGGGAAATC
upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37480.1 (Glycine max), 3'ss of exon 1
tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatca-acagaagggaggataacttgatt--cctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
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-----gttagtgttttatttc--cttcttcaaatttaaatg-cata-aatttgatatttgcttggaaatgatttatgttcacttgaacaatgtttctttttagTGCTGCTTTTAATTCCGAAACACACGAACAAGTTGCAATCAAGAAGATCGGTAACGCATTTGACAATATAATTGATGCTAAGAGAACATTGAGAGAAATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857199|gb|DT006254.1|DT006254EST: TATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTG TGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGG
genomic: TATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagttatt ... ttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaagttcctatttgatcaacagaagggaggataacttgattcctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
cttgattcctttcttt CT-rich tract
tatttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatcaacagaagggaggataacttgattcctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
tgattcc
- attccca
- - - - - gaactca
- - - - - - - - - - - - - - - -catttac
- - - - - - - - - - - - - - - - - - - - - cagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggataa