Sequence
atgc intronic sequence ATGC exonic sequence...gcgtgaaattgaattttcctttatggggtcctcagctttctcagcaactaacgatgggtatgtgtaggtttctgacctgtttgattttcttacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTACTTGGAAGCGGCTCCATGGGCTGAAGATGAAGAAGAGAAGGTGGCTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g00150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G37570.2 (Glycine max), 3'ss of exon 2
gcgtgaaattgaattttcctttatggggtcctcagctttctcagcaacta-acgatgggtatgtgta-ggtttctgacctgtttgattttcttacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTACTTGGAAGCGGCTCCATGGGCTGAAGATGAAGAAGAGAAGGTGGCTGCTC
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-caccacat-gccttttctcctcctttgttgtttttttttttagtgcctgtgtgtttggaatttgtttggtttcttcagggttttgtgggttttttacttagGTTTCAGCTGCGATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCAGCGCCATGGGCGGAGGATGAGGAGGAGAAGGTGGCATCGC
upper sequence: Vv02s0025g00150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G02010.2 (Glycine max), 3'ss of exon 1
gcgtgaaattgaattttcctttatggggtcctcagctttctcagcaactaa---cgatgggtatgtgtaggtttctgacctgtttgattttcttacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTACTTGGAAGCGGCTCCATGGGCTGAAGATGAAGAAGAGAAGGTGGCTGCTC
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-tatttattacactactacactacatgccttttttcctcctttgttgttttgtttagtgcatttgcttggtttattcaggtttttgtgttttttt--acttagGTTTCAGCTGCGATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCCGCCCCGTGGGCGGAGGATGAGGAGGAGAAGGTGGCGTCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713222|gb|FC064001.1|FC064001EST: GGAAGAAGCTCATGAAGGAAGATGTGTCCAGGGTTCTTGAGATATTAAAG GTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTAC
genomic: GGAAGAAGCTCATGAAGGAAGATGTGTCCAGGGTTCTTGGGATATTAAAGgtgatgatga ... tacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTAC
EST:
gi|161721316|gb|FC069712.1|FC069712EST: GGAAGAAGCTCATGAAGGAAGATGTGTCCAGGGTTCTTGGGATATTAAAG GTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTAC
genomic: GGAAGAAGCTCATGAAGGAAGATGTGTCCAGGGTTCTTGGGATATTAAAGgtgatgatga ... tacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactaacgatgggtatgtgtaggtttctgacctgtttgattttcttacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTACTTGGAAGCGGCTCCATGGGCTGAAGATGAAGAAGAGAAGGTGGCTGCTC
ttttcttac CT-rich tract
tttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcgtgaaattgaattttcctttatggggtcctcagctttctcagcaactaacgatgggtatgtgtaggtttctgacctgtttgattttcttacaacttagGTTTCAGCTGCTATCGAGTTTGATGCGGGTGTCTTATCTTGTTTGGAGTACTTGGAAGCGGCTCCATGGGCTGAAGATGAAGAAGAGAAGGTGGCTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -aaattga
- - - - - - - - - - ttatggg
- - - - - - - - - - - - - - -cctcagc
- - - - - - - - - - - - - - - - - - - - tcagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtttg