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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcttgctccgtgtctctaattataggttcattctctgattgtttttttttttttttctcttttttctttttgggtttttgttctttttgtctatctactcaactgttctctgctttgtctgatcgcttgtttgtgttttgtgggtgtttatctgcagATTGCTGCTTTGCCTTTTGGTG

Basic information

species Vitis vinifera
transcript Vv02s0025g00130.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715828|gb|EE094325.1|EE094325
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|71876558|gb|DT025613.1|DT025613
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110719570|gb|EE094813.1|EE094813
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110718422|gb|EE095239.1|EE095239
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110718576|gb|EE095569.1|EE095569
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110722846|gb|EE099484.1|EE099484
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|71855736|gb|DT004791.1|DT004791
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|30323648|gb|CD006910.1|CD006910
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|77583957|gb|DV221019.1|DV221019
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110720498|gb|EE096475.1|EE096475
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110720581|gb|EE096628.1|EE096628
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|26261997|gb|CA813060.1|CA813060
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|77583228|gb|DV220653.1|DV220653
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110717840|gb|EE094048.1|EE094048
EST:     CGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: CGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110709314|gb|EE084676.1|EE084676
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|161713830|gb|FC063465.1|FC063465
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|34546969|gb|CF515201.1|CF515201
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|156738897|gb|EV243018.1|EV243018
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|37189488|gb|CF608837.1|CF608837
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|32249632|gb|CD715451.1|CD715451
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110711755|gb|EE088596.1|EE088596
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110719017|gb|EE096514.1|EE096514
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110719739|gb|EE095129.1|EE095129
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|161718232|gb|FC066020.1|FC066020
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|71873346|gb|DT022401.1|DT022401
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|30298828|gb|CB975622.1|CB975622
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|28959960|gb|CB339981.1|CB339981
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|349827844|gb|FQ422712.1|FQ422712
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|71855683|gb|DT004738.1|DT004738
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|30305007|gb|CB981801.1|CB981801
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|30137552|gb|CB922890.1|CB922890
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110718516|gb|EE095437.1|EE095437
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|71856757|gb|DT005812.1|DT005812
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110719159|gb|EE096816.1|EE096816
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110728525|gb|EE104171.1|EE104171
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|71856874|gb|DT005929.1|DT005929
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|294966746|gb|GW837765.1|GW837765
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|161717044|gb|FC066540.1|FC066540
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG
EST: gi|110718395|gb|EE095180.1|EE095180
EST:     GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTT                         ATTGCTGCTTTGCCTTTTGGTG
genomic: GAATCTCTGGCACACCGATCTCATGGGCACAATTCAAGCCGACACTCGTTgtaagctctt ... ttatctgcagATTGCTGCTTTGCCTTTTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttctctgctttgtctgatcgcttgtttgtgttttgtgggtgtttatctgcagATTGCTGCTTTGCCTTTTGGTG
              gtctgat  putative branch site (score: 4)
                                            tttatct  putative PPT
                                          tgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctcttgctccgtgtctctaattataggttcattctctgattgtttttttttttttttctcttttttctttttgggtttttgttctttttgtctatctactcaactgttctctgctttgtctgatcgcttgtttgtgttttgtgggtgtttatctgcagATTGCTGCTTTGCCTTTTGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT