Sequence
atgc intronic sequence ATGC exonic sequencegtgggtgtattttcaaatacgttatattcggtttagtttcgatggttttgctttttacatgttgggattgctaagaaagtgtcttcttgttaatctgacagGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G34300.1 (Glycine max), 3'ss of exon 2
gtgggtgtattttcaaatacgtta---tattcggtttagtttcgatggttttgctttttacatgttgggattgctaagaaagtgtcttcttgttaatctgacagGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATG
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--agttttattttcaaattcatcaagttaacttatctaaatgctatatttccatttgtaatcagatgacaggattta--acttatgttcttcttcatttaatagGAGGGGGAGAAACCTGACAGAATCATAAGTTCAAACTTGAATTTCACTGGGAAACTTAGCCTTGATGCTAGTAATGGAAACACCGAGGTTTACATGAATG
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G01470.1 (Glycine max), 3'ss of exon 2
gtgggtgtattttcaaatacgtta---tattcggtttagtttcgatggttttgctttttacatgttgggattgctaagaaagtgtcttcttgttaatctgacagGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATG
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--agttttattttcaaattcatcaggttaacttatcaaaatgctatatttccatttgtaatcagatgacaggattta--acttttgtacttgttcatttaatagGAAGGGGAAAAACCTGACAGAATCATAAGTTCAAACTTGAATTTCACTGGGAAACTTAGCCTCGATGCTAGTAATGGAAACACCGAGGTTTACATGAATG
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G31930.3 (Arabidopsis thaliana), 3'ss of exon 2
gtgggtgtattttcaaatacgttatattcggtttagtttcgatggttttgctttttacatgttgggattgctaag-aaagtgtcttcttgttaatctgacagGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATG
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gtaa-tgtactactatatatgtaa----cggttttggtac--ttgtttcaggttgaaattgctttgtttgttgtttattggctattgttgttg--taaacagGAAGGAGAGAAACCAGATAGAGTCATTAGCTCGAACTTGAACTTCACCGGGAAGCTGTCCCCGGACGCGAGCAATGGGAACACGGAAGTTTATATTAACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctttttacatgttgggattgctaagaaagtgtcttcttgttaatctgacagGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATG
tgttaat putative branch site (score: 3)
tttttacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtgtattttcaaatacgttatattcggtttagtttcgatggttttgctttttacatgttgggattgctaagaaagtgtcttcttgttaatctgacagGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG