Sequence
atgc intronic sequence ATGC exonic sequence...catttcagggttggatacagtattgttaggatttgataatctcctgctcatcatttcaattctactcattgacatatatttatttctgcatttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTTGGACTGGATAAATGTCGAGTAAGAGGATTAACAGTGAGAGCATCAGTGA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965545|gb|GW839116.1|GW839116EST: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAA AATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
genomic: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAAgtcagcttct ... tttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
EST:
gi|110373003|gb|EC937206.1|EC937206EST: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAA AATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
genomic: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAAgtcagcttct ... tttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctcatcatttcaattctactcattgacatatatttatttctgcatttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTTGGACTGGATAAATGTCGAGTAAGAGGATTAACAGTGAGAGCATCAGTGA
cattgac putative branch site (score: 3)
tttctgcatttctt putative PPT
attgacatatatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catttcagggttggatacagtattgttaggatttgataatctcctgctcatcatttcaattctactcattgacatatatttatttctgcatttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTTGGACTGGATAAATGTCGAGTAAGAGGATTAACAGTGAGAGCATCAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - -gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgca