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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG

Basic information

species Vitis vinifera
transcript Vv02s0012g01330.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g63710.2 (Oryza sativa), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                                                 ||   | |  |  | |  | | ||||  |  |    |||  |||   ||  |||   ||  |||   || |     | || |  |||   | ||   ||   ||||||| || || || |  || |||||||| || ||||| |||||||| || || |||||||||||| |||||||||||||||| ||  | || || || |
-------------------------------------------------gtaact-tcctcctctcagatcttcttcttct----tcttcttcgcctcaagag---tca-gatctcatgtactagtattgtcgtgtgcttgttaatttcccagATGTGCTTCGACTGCAGCGCCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGTCCACCGCAGCCTCGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                                             || ||| | |      |  | || | ||||||  ||    | || ||    |       | |  ||| | ||      || | | |   |  | |   |  |||  ||||||| || || || || || ||||||||||| ||||| |||||||| || ||  |||||||||||||||||||||| ||||| ||  | || || || |
-------------------------------------------ggttgtgtgtgtgagagagactgtgttcttctgtaattcg--tgtgattttttttc-----tcttacgagtcgactatatttatatgt---gcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G134045_T02 (Zea mays), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                                          | || ||| ||  |||  | |     | ||||| |   |  |     || | |  |  | |  ||     |  |  | ||  |  || |  || |  |    |   |  ||||||| || |||||||| || ||||||||||| |||||||||||||| || ||  |||||||||||||||||||||| || |||||  | || || || |
-----------------------------------------gtactgttgattcaatt--gatcgc--gctttctatcgctctgtgtgagtgccgtccacgtgacttttttttctgtgcgcgaatcgttctgatggtggtgcacg-cgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACGGTGTCTTCCTCTGCATCGACTGCTCGGCGGTGCACCGCAGCCTCGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G094390_T01 (Zea mays), 3'ss of exon 1
---gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattg-gatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
    | ||   |  | || ||||  | |  |     ||  ||  |    |  |  || ||     ||| |  |  |||||   ||||  | |  |  |   |     ||  | |  || ||  || |||| | ||   | | |      |  |  ||||||| || ||||| || || ||||||||||| |||||||||||||| || ||  |||||||||||||||||||||| || | |||  | || || || |
gtactgtggattagattggattttatgggtgatcgatttgattgtggagtcgggattgatcgcactttcttttgctctgtg--tgagtgccgcctgtgcaatattttttgtgtgtgtgcgaattccgtttctgatggcggtgca----agcgtgcagATGTGCTTCGATTGCAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCGGCGGCGCACCGCAGCCTCGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G176612_T01 (Zea mays), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                                                                  ||  |   | ||     |  |||     ||||| | ||  ||  | |  |    |   | | | |    |  | | |     |  ||||||| || || || || || |||||||| || ||||| |||||||| || || |||||||||||| |||||||||||||||  ||  | || || ||||
-----------------------------------------------------------------gtgcgtgcgtattgccctgcgctgccatggatctag-ggcctcctgctccgccggctactgtctctcacatcacgtctc--cctgcagATGTGCTTCGACTGCAACGCCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCCGCCGCCCACCGCAGCCTCGGGG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G083546_T01 (Zea mays), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                                                             ||   || || | ||  ||      |||     |||||  |||  ||  | || |    ||| |  | |  |    ||| |     ||  ||||||| || || || || || |||||||| || ||||| |||||||| || || |||||||||||| |||||||||| ||||| ||  | || |||||||
-------------------------------------------------------------gtacgtgcttat-tggcctgcctgcctgccctggatct--aggcctcctgcttcg---ccggatcctcagatcacatctctcc---ttgcagATGTGCTTCGACTGCAACGCCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCGGCCGTCCACCGCAGCCTTGGGG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G12340.2 (Glycine max), 3'ss of exon 1
---------------gtctgttcttta--ctgaatttct--tcgcggtatttttaaat--gttttcttttgttttta-ttttggtttttggttttctgttcttgagatctggtt-cagatctg--------gaggtttcgcgattggatctcggttttttat---tttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                | ||   || |   ||| |   |  |||  |  |   | | |  ||||  | | || |  | |||| |||| ||||||    ||   ||||||||||| ||||||||        | |||   | | |||  | | |  ||| |||   ||| ||| |||||   ||| |||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||  | ||||| || |
gttttttgtttataattttgaatttcaatttgagtgcataatcgttggttccgtgatttcgtttaatatagtctgaacttttcgtttgtggtttctgatttacgagatctggtttcagatctgtgatacccgtggtagtgtgtttgatttttgaatttgtatggcttttttttttttttaatttcagATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G36700.2 (Glycine max), 3'ss of exon 1
-----------------------gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgt----tttt--attttggtttttggttttctgttcttgagatctggtt-cagatctgga--------ggtttcgcgattggatctcggttttttat---tttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                        ||   | |  | |  | | | |    ||   ||      |||  |||| |    |||   ||||| |||| ||||||    ||   ||||||||||| |||||||| |        | ||  ||| |||  | | |  ||  |||   ||| ||  | |||  |||| |||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||  | ||||| || |
gtttggtttttgtaattttgaatttcgaatttcaatttgagtgcataatcgttggttccgtgatttcgttttatacagtttgaaattttcgtttgtggtttctgatttacgagatctggtttcagatctgcaatacctgtgcttgtgcgtttgatttttgaattggtatggtttttttgttgtttttttttcagATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTTCTCTGCATCGATTGCTCCGCCGTACACCGCAGTCTCGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G35210.2 (Arabidopsis thaliana), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatct--cggttttttattttgtttctttttggttttt--agATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                                                     | || ||     |    |      |||  ||||  | || |||||| || |||   ||||  |||||  | | |||    ||| | | |   |  |||||  |||| ||||||||||| |||||||||||||| || ||||| ||||| || || |||||||| ||||||||||| ||||| || || ||| |||||||||| |
----------------------------------------------------gtaatgttaacgatgttctacagaatctatagattcgattaagatctcgaagttcgtcgatcagatctgacagatttaggatttatctttgaatattttttgcagATTTGTTTTGATTGCAATGCGAAGAACCCAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGCATCGATTGCTCAGCTGTTCATCGGAGTCTTGGCG

upper sequence: Vv02s0012g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G17890.2 (Arabidopsis thaliana), 3'ss of exon 1
gtctgttctttactgaatttcttcgcggtatttttaaatgttttcttttgtttttattttggtttttggttttctgttcttgagatctggttcagatctggaggtttcgcgattggatctcggttt--tttattttgtttct--ttttggtt------tttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                      |      ||||||   ||  ||||| | ||| |   |||  | | |    | || | ||| |     ||| |||||||   |||    || | |||||  | ||  |||||  |  || |  ||||| ||      ||||| | || || ||||||| ||||||||| || |||||||| || || || |||||||| |||||||||||||| || || ||    ||  ||| |||||| |
---------------------gtaatcaaatttttttctgaattcttctctttct---ttgagtatcgtcaatttgatattgtgtat--gtttagatctgagagttgtttgactagatctttgattcatttatgctaattttggttttgatttgccaatttagGTCTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCATCGGTTACATATGGGATTTTCCTCTGCATCGATTGTTCAGCTACTCACCGGAATCTTGGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37183533|gb|CF602887.1|CF602887
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|161715518|gb|FC069460.1|FC069460
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|110706113|gb|EE083724.1|EE083724
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|71867456|gb|DT016511.1|DT016511
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|161710058|gb|FC060595.1|FC060595
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|110707454|gb|EE083867.1|EE083867
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|110732011|gb|EE106922.1|EE106922
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|71887093|gb|DT036148.1|DT036148
EST:     AGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: AGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|110721187|gb|EE097897.1|EE097897
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|110395731|gb|EC961401.1|EC961401
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|161712670|gb|FC062242.1|FC062242
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|110730947|gb|EE108607.1|EE108607
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|71855004|gb|DT004059.1|DT004059
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAGG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
EST: gi|71867980|gb|DT017035.1|DT017035
EST:     CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAG                         ATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT
genomic: CCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGgtctgttctt ... tggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaggtttcgcgattggatctcggttttttattttgtttctttttggtttttagATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGG
                         ttttttattttgtttc  CT-rich tract
                         ttttttattttgtttc  TA-rich tract