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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggattttttcatccccgtctcattttctctctattcaagcacattcatttagaattgttttttttttttttgttttttgtttgtttccatttctgctgtaattcattctctaatcgctctcccaaacccttctagGGTTCTCGATATCAATCCCGATGGGTTGTACTGTGAGAGAAAAGCACATCCGAACAACTCGCAGACCTCGATCGGTGAAAACTGACAACGATCACGCCAG

Basic information

species Vitis vinifera
transcript Vv02s0012g01020.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttccatttctgctgtaattcattctctaatcgctctcccaaacccttctagGGTTCTCGATATCAATCCCGATGGGTTGTACTGTGAGAGAAAAGCACATCCGAACAACTCGCAGACCTCGATCGGTGAAAACTGACAACGATCACGCCAG
                           ctctaat  putative branch site (score: 3)
                                              cccttct  putative PPT
                  taattcatt  TA-rich tract