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...gtcattctgttgtaagctgcactttaataaatagaattctattttatgatttataatgtataccttttatgctcaatatcttctataaaaaatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACTTGGCACATGTCCTGTGCGGCAGATTGGAGGTTGCTCTTTCTTTTATATG
species | Vitis vinifera |
transcript | Vv02s0012g00910.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGATGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|71864801|gb|DT013856.1|DT013856
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGATGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|71863379|gb|DT012434.1|DT012434
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGATGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|161712815|gb|FC062338.1|FC062338
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|71863591|gb|DT012646.1|DT012646
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGATGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|71857060|gb|DT006115.1|DT006115
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGATGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|352777816|gb|FQ466869.1|FQ466869
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACTEST: gi|71863093|gb|DT012148.1|DT012148
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
EST: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGG GGGAAACATGGTGGATGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
genomic: AATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGgtatattcat ... aatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACT
atgatttataatgtataccttttatgctcaatatcttctataaaaaatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACTTGGCACATGTCCTGTGCGGCAGATTGGAGGTTGCTCTTTCTTTTATATG
tttttc CT-rich tract
tcaatatcttctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattctgttgtaagctgcactttaataaatagaattctattttatgatttataatgtataccttttatgctcaatatcttctataaaaaatttttcagGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACTTGGCACATGTCCTGTGCGGCAGATTGGAGGTTGCTCTTTCTTTTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- cattctg
- - - - - - - -gctgcac
- - - - - - - - - - - - - - -aatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa