Sequence
atgc intronic sequence ATGC exonic sequencegtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgcctacctcgtaccatgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 1
gtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgccta--cctcgtacca-----tgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG
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----------------------------------------------------------------------------------------------------ctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccatttgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCG
upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 1
gtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgccta--cctcgtacca----tgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG
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---------------------------------------------------------------------------------------------------gctagctgtgggggcagtcagatatggactccatttgcctaaccctcgtctcaccattgattatttgttcctgacatagcttattctcttgaatccacagGCTCTTGAGGGATACGGCGCCGTCCACGACCCCAACTTCCG
upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 3
---------gtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgcctacc-tcgtacc-----atgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG
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gtaattgtggttttctcctta----catatatgggatgataa-acaagatatt-----tttagggat-----gttatgaatctcaactcatccgtg--------gagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatgat-gtttgttgctgacatagcttattctcttcaattcacagGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacctcgtaccatgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG
tgctgac putative branch site (score: 2)
ttctcttg putative PPT
atgattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttcctccttaatcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgcctacctcgtaccatgattatttgttgctgacatagcttattctcttgaatccacagGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT