Sequence
atgc intronic sequence ATGC exonic sequence...ttgcttttcttccaggccaagaagattggcattcagtctatactgccttgttttttctttttgcctctttcactaagatatttggtttcatgtaggtgagCCCACTGGCAAGTCTCAATAGAAGAAGGAGAAGCCAAAGCTCGTGAACTTAACATCATGTTCATTGACACAAGTGCCAAAGCTGGCTTCAATATAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G04340.1 (Glycine max), 3'ss of exon 5
---------------------------ttgcttttcttccaggccaagaagattggcattcagtctatactgcc-ttgttttttctttttgcctctttcactaaga--tatttggtttcatgtag-gtgagCCCACTGGCAAGTCTCAATAGAAGAAGGAGAAGCCAAAGCTCGTGAACTTAACATCATGTTCATTGACACAAGTGCCAAAGCTGGCTTCAATATAAAG
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gtaataatggtagaatgatttgcttgcttgaattgtttggcacttgagatgttccatgtttgctttacgttgttgttttcatgtcttgtaaaagtgttcttttaaatttacacaatttcactcatcatgagtctatagGCAAGTCTCTACAGAGGAAGGGGAAGCTAAGTCTCGTGAACTGAACGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGGTTTAATATAAAG
upper sequence: Vv02s0012g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G41090.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------ttgcttttcttccaggccaagaagat-tggcattcagtctatactgccttgttttttctttttgcctctttcactaagatatttggtttcatgtaggtgagCCCACTGGCAAGTCTCAATAGAAGAAGGAGAAGCCAAAGCTCGTGAACTTAACATCATGTTCATTGACACAAGTGCCAAAGCTGGCTTCAATATAAAG
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gtaataatggtagaatgatttggttgcttgaattgtttggaacttgagacgttccatgtttgctctacgttgttgttttcatgtcttgtgaaagtgttcttttaaatttcgattcatcagcccatttctggtgtcacctt-atatttatgagcaatattatttgcatgcgtctatagGCAAGTCTCTACAGAGGAAGGGGAAGCTAAGTCTCGTGAACTAAACGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGGTTTAATATAAAG
upper sequence: Vv02s0012g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G44610.1 (Arabidopsis thaliana), 3'ss of exon 4
--ttgcttttcttccaggccaagaagattggcattcagtctatactgccttgttttttctttttgcctctttcactaagatatttggtttcatgtaggtgagCCCACTGGCAAGTCTCAATAGAAGAAGGAGAAGCCAAAGCTCGTGAACTTAACATCATGTTCATTGACACAAGTGCCAAAGCTGGCTTCAATATAAAG
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tacagggtttctttatagtcaacacgctttga---cacttgatggtgccta-----ctacatttgttactgccaattgggcctttg-tattaaatattttgtttctcagGCAAGTGTCAATAGAGGAAGCAGAAGCTAAGGCACGCGAACTTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttgttttttctttttgcctctttcactaagatatttggtttcatgtaggtgagCCCACTGGCAAGTCTCAATAGAAGAAGGAGAAGCCAAAGCTCGTGAACTTAACATCATGTTCATTGACACAAGTGCCAAAGCTGGCTTCAATATAAAG
ttttttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgcttttcttccaggccaagaagattggcattcagtctatactgccttgttttttctttttgcctctttcactaagatatttggtttcatgtaggtgagCCCACTGGCAAGTCTCAATAGAAGAAGGAGAAGCCAAAGCTCGTGAACTTAACATCATGTTCATTGACACAAGTGCCAAAGCTGGCTTCAATATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - caggcca
- - - - - - - - - - - - - - gcattca