1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tttgaactgagcattttattgtagaaatgcacacatatttattgggggctgggggctttaaaaatagaagactaattggattttttcatattttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTGGAAGGCCTTCAATGTCTCTTAATGCAATTCCATTGGTTTCACCTAGTA
species | Vitis vinifera |
transcript | Vv01s0244g00070.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|349814198|gb|FQ414817.1|FQ414817
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351022412|gb|FQ445187.1|FQ445187
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351046750|gb|FQ454360.1|FQ454360
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|71864186|gb|DT013241.1|DT013241
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTEST: gi|352798824|gb|FQ478459.1|FQ478459
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|352768718|gb|FQ467930.1|FQ467930
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351032600|gb|FQ458965.1|FQ458965
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCCTCAGTGCGCTCAACATCTGCTEST: gi|351012981|gb|FQ433708.1|FQ433708
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351024338|gb|FQ423761.1|FQ423761
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351052036|gb|FQ455329.1|FQ455329
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351037721|gb|FQ464162.1|FQ464162
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351030666|gb|FQ438504.1|FQ438504
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351036830|gb|FQ459352.1|FQ459352
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351031918|gb|FQ460175.1|FQ460175
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|349821835|gb|FQ412990.1|FQ412990
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351037441|gb|FQ460640.1|FQ460640
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351026953|gb|FQ436606.1|FQ436606
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351047980|gb|FQ441152.1|FQ441152
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|161717169|gb|FC066567.1|FC066567
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351052469|gb|FQ452502.1|FQ452502
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTEST: gi|351055097|gb|FQ440436.1|FQ440436
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
gggctgggggctttaaaaatagaagactaattggattttttcatattttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTGGAAGGCCTTCAATGTCTCTTAATGCAATTCCATTGGTTTCACCTAGTA
gactaat putative branch site (score: 2)
ttttttcatatttt putative PPT
actaattggatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaactgagcattttattgtagaaatgcacacatatttattgggggctgggggctttaaaaatagaagactaattggattttttcatattttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCTGGAAGGCCTTCAATGTCTCTTAATGCAATTCCATTGGTTTCACCTAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - -cacacat
- - - - - - - - - - - - - - - - - - - - -ttggggg
- - - - - - - - - - - - - - - - - - - - - -gggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata