1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagttgaatggttggatgcaatattggctatttggggtggttgtggtggcatacaatccatatgcaatcttcagctgtttttctttcttgttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
species | Vitis vinifera |
transcript | Vv01s0150g00590.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|110429737|gb|EC996240.1|EC996240
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|110710820|gb|EE087309.1|EE087309
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|32269037|gb|CD718196.1|CD718196
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|161708201|gb|FC057845.1|FC057845
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|110701540|gb|EE079224.1|EE079224
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|161714413|gb|FC064424.1|FC064424
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|110702872|gb|EE079225.1|EE079225
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAGEST: gi|161708757|gb|FC060880.1|FC060880
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
EST: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAG GGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
genomic: AAGCCCTCATTTCTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt ... ttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
gtggcatacaatccatatgcaatcttcagctgtttttctttcttgttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
tcttcagctgtttttc CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttgaatggttggatgcaatattggctatttggggtggttgtggtggcatacaatccatatgcaatcttcagctgtttttctttcttgttcttctcagGGAATAAGGTTGCTGTAATTGAGAACTTGGGCGCTACAGAG
- - tgaatgg
- - - - - - -ggatgca
- - - - - - - - - - - - tggctat
- - - - - - - - - - - - - - - - -ggggtgg
- - - - - - - - - - - - - - - - - - - - - gtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcaa