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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaacttgagattagaaggcttacaaatttgtccccccttctattattattcttgttgaaggcttctcatagtcatacgtgctctttttggtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTATGGTCTCTGGAGCAAGGGGTGCTGCTCCAAGGAAGCCTATCGATGTGCCA

Basic information

species Vitis vinifera
transcript Vv01s0150g00460.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008967|gb|BQ794001.1|BQ794001
EST:     CACTTCCTCAGTCTCTCCTTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: CACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|110706358|gb|EE081812.1|EE081812
EST:     CTCCTTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: CTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71855708|gb|DT004763.1|DT004763
EST:     ACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71857132|gb|DT006187.1|DT006187
EST:     ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|110720672|gb|EE096797.1|EE096797
EST:     ATCCATTTCTCCACATGCTTACTACACTTCCTCAGTCTCTCCTTCTCGG                         AACAAAAATGGCTTCCTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ATCCATTTCTCCACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|110689340|gb|EE065480.1|EE065480
EST:     CTCAGTCTCTCCTTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: CTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71857756|gb|DT006811.1|DT006811
EST:     ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCCGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71858756|gb|DT007811.1|DT007811
EST:     ATCCATTTCTCCACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ATCCATTTCTCCACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|161716374|gb|FC064899.1|FC064899
EST:     CAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: CAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71858567|gb|DT007622.1|DT007622
EST:     ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71859446|gb|DT008501.1|DT008501
EST:     CCACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: CCACATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
EST: gi|71859081|gb|DT008136.1|DT008136
EST:     ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGG                         AACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT
genomic: ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGgtaacgaact ... gtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattcttgttgaaggcttctcatagtcatacgtgctctttttggtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTATGGTCTCTGGAGCAAGGGGTGCTGCTCCAAGGAAGCCTATCGATGTGCCA
                                     tcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacgaacttgagattagaaggcttacaaatttgtccccccttctattattattcttgttgaaggcttctcatagtcatacgtgctctttttggtggttgcagAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTATGGTCTCTGGAGCAAGGGGTGCTGCTCCAAGGAAGCCTATCGATGTGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA