1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcattccccttctgctaattttttgccatgtttaaatgtctgggaagcttttctttgaatggtctttatattttacttactaacttggtgcaaaaaatagGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCCAGAGAGTAGGTTGCTTGTCCTCATGATTTCTTCACCAAATCGCCATGAC
species | Vitis vinifera |
transcript | Vv01s0150g00320.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGGGAGAGAACGGCAACGGTATAAGGATCATCTCAGGCTTGTTGCAGG GTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCCEST: gi|110385476|gb|EC950008.1|EC950008
genomic: ATCGGGAGAGAACGGCAACGGTATAAGGATCATCTCAGGCTTGTTGCAGGgtctgtcact ... caaaaaatagGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCC
EST: CAGGCTTGTTGCAGG GTGCATTCCCTTTAAGTTTGAGAAAACTGTTGATGGTCACACACGCAATCCEST: gi|110362042|gb|EC925549.1|EC925549
genomic: CAGGCTTGTTGCAGGgtctgtcact ... caaaaaatagGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCC
EST: ATCGGGAGAGAACGGCAACGGTATAAGGATCATCTCAGGCTTGTTGCAGG GTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCC
genomic: ATCGGGAGAGAACGGCAACGGTATAAGGATCATCTCAGGCTTGTTGCAGGgtctgtcact ... caaaaaatagGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCC
agcttttctttgaatggtctttatattttacttactaacttggtgcaaaaaatagGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCCAGAGAGTAGGTTGCTTGTCCTCATGATTTCTTCACCAAATCGCCATGAC
tactaac putative branch site (score: 0)
tttatattttacttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattccccttctgctaattttttgccatgtttaaatgtctgggaagcttttctttgaatggtctttatattttacttactaacttggtgcaaaaaatagGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCCAGAGAGTAGGTTGCTTGTCCTCATGATTTCTTCACCAAATCGCCATGAC
- - - cccttct
- - - - - - - - - - - - -ccatgtt
- - - - - - - - - - - - - - - - - - tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttggtg