1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaaagcataaactgatgatgaatttggccggttgttgtaacattaagttctatcaatttgttttctgaagttttatcattttacttttcatgattgaagAGAAATGGCAGCAGAGTCTATTTACAAGGAGAGATGTATTGCTGTGGATGACGGCTCGAGTTGGGCCAAATACATGTCTATCTCTGGTTCTCCTGATGAT
species | Vitis vinifera |
transcript | Vv01s0146g00020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGGTTTG-ATGCTGCCGTTGGCGAACTGCTTGATCTTGGAATGCAGAG AGAAATGGCAGCAGAGTCTATTTACAAGGAGAGATGTATTGCTGTGGATGAEST: gi|351027659|gb|FQ446826.1|FQ446826
genomic: GAGGGTTTGGATGCTGCCGTTGGCGAACTGCTTGATCTTGGAATGCAGAGgtaattttct ... atgattgaagAGAAATGGCAGCAGAGTCTATTTACAAGGAGAGATGTATTGCTGTGGATGA
EST: GAGGGTTTG-ATGCTGCCGTTGGCGAACTGCTTGATCTTGGAATGCAGAG AGAAATGGCAGCAGAGTCTATTTTACAAGGAGAGATGTATTGCTGTGGATG
genomic: GAGGGTTTGGATGCTGCCGTTGGCGAACTGCTTGATCTTGGAATGCAGAGgtaattttct ... atgattgaagAGAAATGGCAGCAGAGTCTATTT-ACAAGGAGAGATGTATTGCTGTGGATG
aagttctatcaatttgttttctgaagttttatcattttacttttcatgattgaagAGAAATGGCAGCAGAGTCTATTTACAAGGAGAGATGTATTGCTGTGGATGACGGCTCGAGTTGGGCCAAATACATGTCTATCTCTGGTTCTCCTGATGAT
cttttcat CT-rich tract
aagttttatcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagcataaactgatgatgaatttggccggttgttgtaacattaagttctatcaatttgttttctgaagttttatcattttacttttcatgattgaagAGAAATGGCAGCAGAGTCTATTTACAAGGAGAGATGTATTGCTGTGGATGACGGCTCGAGTTGGGCCAAATACATGTCTATCTCTGGTTCTCCTGATGAT
-aaaagca
- - - - -aaactga
- - - - - - - - - - - - -tggccgg
- - - - - - - - - - - - - - - - - - - -aacattaa
- - - - - - - - - - - - - - - - - - - - - - - - - ctatcaa