1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agcaaaaccattttctgggtaatatactggaagaaataaatgtggaggagtatataattttataattgttagtagagaatgaatggatggctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATGGAACATCGAGGGTACTCTCAGACCAGGCTAGTATATTTGTAAAGGGAT
species | Vitis vinifera |
transcript | Vv01s0137g00580.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAG GCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATEST: gi|110732680|gb|EE108178.1|EE108178
genomic: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAGgtaaaactcg ... ctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCAT
EST: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAG GCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATEST: gi|161716341|gb|FC064657.1|FC064657
genomic: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAGgtaaaactcg ... ctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCAT
EST: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAG GCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATEST: gi|110712429|gb|EE090038.1|EE090038
genomic: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAGgtaaaactcg ... ctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCAT
EST: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAG GCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCAT
genomic: CTCGGAAGAGGCCTAGGTTTGCTTGGGATGCACCTCAACTTCACCCTAAGgtaaaactcg ... ctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCAT
aggagtatataattttataattgttagtagagaatgaatggatggctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATGGAACATCGAGGGTACTCTCAGACCAGGCTAGTATATTTGTAAAGGGAT
tatataattttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaaaaccattttctgggtaatatactggaagaaataaatgtggaggagtatataattttataattgttagtagagaatgaatggatggctgtgtgtagGCTCAGCCAGGAATATATTGTGGGCAAGAGGTTGGGAATGTGACAAGCCATGGAACATCGAGGGTACTCTCAGACCAGGCTAGTATATTTGTAAAGGGAT
- caaaacc
- - - - - -tttctgg
- - - - - - - - - - - -atactgg
- - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgg