Sequence
atgc intronic sequence ATGC exonic sequencegtaatttcaaatttgcatgccaactggtcgatgaaatgccggattgatttttccctaatttttatccattattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G13780.1 (Glycine max), 3'ss of exon 1
------------------gtaatttcaaatttgcatgcca-actggtcgatgaaatgccggattgatttttccct----aatttttatccattattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCC
| | | | ||| || | | || | || | || || | | | ||| || | || |||||||||||| || ||||| ||||| ||||| || |||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| || ||||
actcatgtttgcttagttttgttactagaattgtctgtaatattgattcatcccaattgggtttagtctgaatttgaaaaatgattttttttttttgcagGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCGTGTTTTATTGCTCCGACAGTTGTTGCTGTTAATGAGTCGTTTCTGAATCAATCGAGGGGCTCT
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 1
------------gtaatttcaaatt-tgcatgc---caac-tggtcgatgaaatgccg-gattgatttttccctaatttttatccattattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCC
|| || | || | |||| ||| || |||||||||||| | ||| || || | | | | | |||||||||||||||||||||| ||||| ||||| || ||||| || || || || ||||| ||||| || ||||||||||| ||||||||| ||| ||
gtacgttcaatgataggtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtgtgt-attgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294967135|gb|GW840010.1|GW840010EST: ATGGATTCAGCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGG GTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCC
genomic: ATGGATTCAGCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGGgtaatttcaa ... attattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actggtcgatgaaatgccggattgatttttccctaatttttatccattattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCC
ccctaat putative branch site (score: 3)
taatttttatccatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttcaaatttgcatgccaactggtcgatgaaatgccggattgatttttccctaatttttatccattattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT