Sequence
atgc intronic sequence ATGC exonic sequence...ttgtaatttgctcttattattacatggatatccattttaaaagccaggagattcttctttgggaaatgtactgatttttgtttttgggtctcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCATAAAAAATAC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869613|gb|DT018668.1|DT018668EST: TTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTG CCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCAT
genomic: TTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtattt ... tcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCAT
EST:
gi|352782485|gb|FQ470388.1|FQ470388EST: TTGCTTCAAGACCTTTGGTTGTGGATCCGCGATCGCCTCTTCCTCTGTTG CCACGGAATGGGTGAAAGGCAAGCAAACAAAGGAAGTTCTATCCATAAAAA
genomic: TTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtattt ... tcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCATAAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggagattcttctttgggaaatgtactgatttttgtttttgggtctcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCATAAAAAATAC
tctcacttcc CT-rich tract
tgatttttgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtaatttgctcttattattacatggatatccattttaaaagccaggagattcttctttgggaaatgtactgatttttgtttttgggtctcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCATAAAAAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - tacatgg
- - - - - - - - - - - - - - - -ccatttt
- - - - - - - - - - - - - - - - - - - aaaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgggaaa