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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcatttcattggtaggagtacatatctcaactatgctcatgctcatgtaactcgtgtttaacctttaatttttactatatgggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA

Basic information

species Vitis vinifera
transcript Vv01s0026g02710.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os07g48450.3 (Oryza sativa), 3'ss of exon 1
gtgagtttcatttcattggtaggagtacatatctcaactatgctcatgc-tcatgtaactcgtgtttaacctttaatttttactatatgggctgt-gcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA
                  ||| |  | | |  ||| |  ||    |||  ||   | | | | ||    |  | ||||  ||||   |      | |||| ||||||||  |  || || | ||||||||||||||| |||||||| ||||| ||||| ||||| ||     | || ||||| ||  | | ||| || ||
------------------gtaagccttctt-cctcgatcatatcgatggatcgattgagttg-gtcgttcggtcaattgctactggttaattaattgcagCGAAGGCGGTGTACGGGGAGAGTGAGTGGTATTTCTTCAGCCCGCGAGACCGCAAGTACCCCAACGGAATCCGGCCGAACCGCGCCGCCGGGTCGGGGTA

upper sequence: Vv01s0026g02710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G35630.1 (Glycine max), 3'ss of exon 1
-gtgagtttcatttcattggtaggagtacatatctcaactatgctcatgctcatgtaactcgtgttta-acctttaatttttactatatgggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA
   ||  ||    ||   |       |  | |||   |  |||       |  | | ||   |  | | ||  ||  | || |||      |   |||||| ||  | ||||||||||||||||| |||||||||||||| ||  | ||| | ||||| || |||||||  || || |||||||| || ||||| || ||
accgaaattgcaatcgcggaccctttttaaaatccttaacatgaatggtattgtattacatctcctaacacacttgttattaacttaccatggaatgcagATAAAACAGAATTTGGAGAAAATGAATGGTATTTCTTTAGTCCAAGAGACAGGAAGTACCCAAATGGGGTGAGGCCTAACCGAGCAACTGTGTCTGGGTA

upper sequence: Vv01s0026g02710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G04400.1 (Glycine max), 3'ss of exon 1
---gtgagtttcatttcattggtaggagtacatatctcaactatgctcatgctcatgtaactcgtgtttaacctttaatttttactatatgggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA
    |||  ||    |      | |   || | | ||  || |||       | || | ||   | |   ||  ||  | || | |      |   |||||| ||  | ||||||||||||||||| |||||||||||||  ||  | ||| | ||||| || |||||||  || || |||||||| || ||||| || ||
cagctgaaattgtagttgcaaattgttttaaaaaccttgac-atgaatggtattatattacatctctaacacacttgttattaaattaccatggaatgcagATAAAACAGAATTTGGAGAAAATGAATGGTATTTCTTTACTCCAAGAGACAGGAAGTACCCAAATGGGGTGAGGCCTAACCGAGCAACCGTGTCAGGGTA

upper sequence: Vv01s0026g02710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G06150.2 (Glycine max), 3'ss of exon 1
----gtgagtttcattt-cattggtaggagtacatatctcaactatgct-catgctcatgtaactcgtgtttaacctttaatttttactatatgggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA
    |||| | |  | |  ||| | |   ||  |    |  | |||| | ||||  |||||  | | ||||    |||  || || | |      |   | |||| ||  | || ||||||||||| |||||||| ||||||||||| || ||  | |||||||| |||||||  || || ||  |||| || ||||| || ||
ctgtgtgaatattgtctatatttgaatatgttgaaccttataatatgtttcatgtgcatgtttcacttgtt----cttacatgttgattgctcatgaaatacagATAAAACAGACTTTGGAGAAAAGGAGTGGTACTTCTTTAGCCCACGAGAGAGGAAGTATCCAAATGGGGTGAGGCCTAATAGAGCAACCGTGTCTGGGTA

upper sequence: Vv01s0026g02710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G69490.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgagtttcatttcattggt--aggagtacatat-ctcaactatgctcatgctcatgtaactcgtgtttaacctttaatttttactatatgggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA
|| ||   |  || ||   |  | ||  || ||| ||     ||| ||||| | |    |      ||     |||  ||| | |  | ||   | | |||||||  | || |||||||||||||||||||||||||| |||||  | ||  | || ||||| || || |  ||||| ||||| ||  | || ||||| ||
gttagacccggtttatctctcaatgataacctattcttctagatgttcatgttta---gagctactttccttatttgctttgttcgttttgtatt-tacagAGAAAACAGAGTTTGGAGAAAATGAGTGGTATTTCTTCAGCCCTAGAGAAAGAAAATATCCAAACGGAGTCAGACCAAACCGGGCAGCTGTTTCCGGTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110392611|gb|EC958153.1|EC958153
EST:     CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTG                         AGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
genomic: CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTGgtgagtttca ... ggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
EST: gi|110695448|gb|EE073473.1|EE073473
EST:     CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTG                         AGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
genomic: CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTGgtgagtttca ... ggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
EST: gi|351053923|gb|FQ441689.1|FQ441689
EST:     CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTG                         AGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
genomic: CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTGgtgagtttca ... ggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
EST: gi|110384531|gb|EC948975.1|EC948975
EST:     TGGGAATTGCCTG                         AGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
genomic: TGGGAATTGCCTGgtgagtttca ... ggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
EST: gi|110728565|gb|EE104246.1|EE104246
EST:     CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTG                         AGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC
genomic: CATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTGgtgagtttca ... ggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgctcatgtaactcgtgtttaacctttaatttttactatatgggctgtgcagAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTA
                    tttaacctttaatttt  TA-rich tract