Sequence
atgc intronic sequence ATGC exonic sequence...tactgtctctttcactctcttctctttgttcaggattttgtttttgatatcctaattttgaatcttttttacctgatgttttaacttcggtatgtttcagGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g02230.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G15240.1 (Glycine max), 3'ss of exon 1
tactgtctctttcactctcttctctttgttcaggattttgtttttgatatcctaattttgaatcttttttacctgatgttttaacttcggtatgt-ttcagGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATA
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ccctacatgtacacattaaaggatcttatgcttaattttctttccacaagggaaaacatatgtttctaat-tttcctcctttcatttatgtgtgggtttagAAATGCATACAACATGGTGCTTCACAAATTTGGTGAGAAGCTCTACTCAGGGCTGGTTGCAACCATGACTGGACATCTCAAAGATATAGCTCAATCTGTT
upper sequence: Vv01s0026g02230.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G41130.1 (Glycine max), 3'ss of exon 1
tactgtctctttcactctcttctctttgttcaggattttgtttttgatatcctaattttgaatcttttttacctgatgttttaacttcggtatgt-ttcagGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATA
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-agctacatgtacacattaaaggatcttatgcttatttttctttccacaagggaaaacatatgtttctaattttcctccttctatttatgtgtggatttagAAATGCATACAACATGGTGCTTCACAAATTTGGGGAGAAGCTCTACTCAGGGCTGGTTGCGACCATGACTGGGCATCTCAAAGCTATAGCTCAATCTGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatatcctaattttgaatcttttttacctgatgttttaacttcggtatgtttcagGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATA
ttttaac putative branch site (score: 2)
taattttgaatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactgtctctttcactctcttctctttgttcaggattttgtttttgatatcctaattttgaatcttttttacctgatgttttaacttcggtatgtttcagGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATA
tactgtc
- - - - - - cactctc