Sequence
atgc intronic sequence ATGC exonic sequence...ggagccatgtttgaagatgtctgttctgcttaatcaatgtgaattttctttgtgtaatgttttacattctcatatgttggttctatgtgtgggtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G04930.1 (Glycine max), 3'ss of exon 1
ggagccatgtttgaagatgt-ctgttctgcttaatcaatgtgaattttctttgtgtaatgttttacattctcatatgttggttctatgtgtgg------gtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
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---cttatttccttatctattctaaaacccataatgcatgatgctatttttactgcttatcctaatactttt-tattttctctctcttggtggcttcccattagCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCTCCAGCAGTCTCTTCTACAACCACTAGTAATGCAGAAAGCAATTCGTCCACTTC---
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G16300.1 (Glycine max), 3'ss of exon 2
-----ggagccatgtttgaagatgtctgtt-ctgcttaatcaatgtgaattttctttgtgtaatgttttacattctcatatgttggttctatgtgtgggtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
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tctatatctccat-cttgtctaagcttgctactacttgatgctatcctattgctttcgctgattactttttgctctctcctg--gattttggcttttcattagCTGAAAGTAAATCAACTATTGATACAAGTAGAGATCAACCAACAGTCCCAGTAGTCTCTTCAACAACCACTAGTAATGCTGAAAGCAATTCATCCACTTC---
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G40770.1 (Glycine max), 3'ss of exon 1
ggagccatgt-ttgaagatgtctgttctgcttaatcaatgtgaattttctttgtgtaatgtt--ttacattct-catatgttgg-ttctatgtgtgggtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
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--atctatatctccatcttgtctaagcttgctactacatgatgctatcctattgcttctgctgattactttttgcctctcctggattttggcttttcattagCTGAAAGTAAATCAACTATTGATACAAGTAGAGATCAACCAACACTCCGAGTAGTCTCTTCGACAACCACTAGTAATGCCGAAAGCAATTCATCCACTTC---
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G02570.1 (Glycine max), 3'ss of exon 1
-----ggagccatgtttgaagatgtctgttctgcttaat-caatgtgaattttctttgtgtaatgttttacattctca-tatgttggttctatgtgtgggtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
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cttatttccttatctattctaaaacctataatgcatgatgctatttttactgcttatcc-taatactttttattttccctctcttggtggctt---tccattagCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCCCCAGCAGTCTCTTCTACAACCACTAGTAATGCTGAAAGCAATTCATCATCCAC--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttgtgtaatgttttacattctcatatgttggttctatgtgtgggtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
taatgttttacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggagccatgtttgaagatgtctgttctgcttaatcaatgtgaattttctttgtgtaatgttttacattctcatatgttggttctatgtgtgggtcaacagAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - ccatgtt
- - - - - - - - -tgtctgt
- - - - - - - - - - - - -ctgctta
- - - - - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgtg