Sequence
atgc intronic sequence ATGC exonic sequence...tttatatgttaatatctgtgttgttcttactactacactgtcatgcattttgatgtcaaggggtgctcttgagtaaattatcttccattataatttgtagGGGAGTGACAAGGAAACTTCTTTTATTAAGTTTAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGGCATATATTCTTCTTCCAATACATCAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G351786_T01 (Zea mays), 3'ss of exon 9
tttatatgttaatatctgtgttgttcttactactacactgtcatgcattttgatgtcaaggggtgctcttgagtaaattatcttccattataatttgtagGGGAGTGACAAGGAAACTTCTTTTATTAAGTTTAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGGCATATATTCTTCTTCCAATACATCAAGA
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acctcatactaattcagaatttgatgcctttattatgatatttgctgcgctatccatatactaattttttgattgacttcttttatttcttaatctgaagAAG---GACAAGATCACTTATTTTTTGAAATTGAGAAGATGGTGGAAGGGTGTAGATATATTTCAAATGGCATATATATTGATGCCTGTGCATGCAGA
upper sequence: Vv01s0026g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G18950.1 (Glycine max), 3'ss of exon 2
---tttatatgttaatatctgtg-ttgttcttactactacactgtca-tgcattttgatgtcaaggggtgctcttgagtaaattatcttccattataatttgtagGGGAGTGACAAGGAAACTTCTTTTATTAAGTTTAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGGCATATATTCTTCTTCCAATACATCAAGA
||| |||||||| ||| | ||| | ||| || ||| | | | | || | |||||| || |||| | ||| |||| | ||| ||||| | || | ||| ||||| ||||| |||||||| ||||||||||| ||||||||||| ||| || | ||||||||||| | ||
tgtttttaatgttaatttctatccttgccttcctcactttcctttcactttgtacttttttctgtgtatgctct-----aatttattatttattgtaatatctagCAAAGTGATAGAGAGATGATCTTTGCAAAGTTCAGAAGATGGTGGAAAGGTGTAAATATTTTTCAGAAGGCTTATGTTTTGATTCCAATACATGAGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttgatgtcaaggggtgctcttgagtaaattatcttccattataatttgtagGGGAGTGACAAGGAAACTTCTTTTATTAAGTTTAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGGCATATATTCTTCTTCCAATACATCAAGA
ttttgat putative branch site (score: 4)
taaattatcttccatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttatatgttaatatctgtgttgttcttactactacactgtcatgcattttgatgtcaaggggtgctcttgagtaaattatcttccattataatttgtagGGGAGTGACAAGGAAACTTCTTTTATTAAGTTTAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGGCATATATTCTTCTTCCAATACATCAAGA
- - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcttg