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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcttgttgtacatttggattattccaattatcagacctcattaagccctaaactttgcagttattttttggaatctcatgattggtacagGAACTGATCCAACAGATGGCAAATGTTCAGTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTA

Basic information

species Vitis vinifera
transcript Vv01s0011g06090.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g68810.1 (Oryza sativa), 3'ss of exon 20
gtatttcttgttgtacatttggattattccaattatcagacctcattaagccctaaactttgcagttattttttggaatctcatgattggtacagGAACTGATCCAACAGATGGCAAATGTTCAGTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTA
           | |||   ||| |  |  |||   ||   |||   ||  |    || | |     | |    |  ||| | || | |  | |||||||| || || || ||||||||||| || ||||| |||||| |||||||||| ||| | |||||||||||||||||||| ||  | |||  ||| ||| 
----------gtctactactggctactgtcaagcttcc--ccttgctac-cttggaattgtatgtgtctgaagtctaatatgatcactcctgcagGAACTCATTCAGCAAATGGCAAATGTGCAATACACTGAGAACATGACTGAGGAGCAGGTTGATGCTATGGCAGGGAGTGAAACATTGCGGCTTCAAGCTT

upper sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 17
----------------------------------gtatttcttgttgtacatttggattattccaattatcagacctcattaag-ccctaaactttgcagttattttttggaatctc-atgattggtacagGAACTGATCCAACAGATGGCAAATGTTCAGTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTA
                                   |||| |    |  | | |    ||||   |  |||  |  ||||| ||    | |||  |||  | |||   |    || |       |  | ||||| || || ||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| | ||||| || |
gtttttcttttttctttttctttgtctgtcttttttattcccaaataaataataatcttatgtgagatat-ggctctcatgaaaattccaaatgttg--gctataaataaatatttttgctggtttttcagGAGCTTATTCAACAAATGGCTAATGTCCAGTACACGGAGAACTTGACTGAGGAACAGTTGGATGCAATGGCAGGGAGTGAGACTCTCAGATATCAAGCAA

upper sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G34330.1 (Glycine max), 3'ss of exon 20
-----------------------------gtatttcttgttgtac--atttggattattccaattatcagacctcattaagccctaaactttgca-gttattttttgg--aatctcatgattggta--cagGAACTGATCCAACAGATGGCAAATGTTCAGTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTA
                             || ||| ||     ||  ||   || || ||  ||  | |||  |   |       ||| |    | |||   | |     ||| |  |   ||||   ||||| || || ||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| ||| | ||||| || |
gtttttcttttttgtttttctttgtctttgtcttttttcccccacgaataaagaataatcttat-gtgagatatggctctaatgaaaaatccaaatgttggctataaataaatatttttgctggttcccagGAGCTTATTCAACAAATGGCTAATGTCCAGTACACGGAGAACTTGACTGAGGAACAGTTGGATGCAATGGCTGGGAGTGAGACTCTCAGATATCAAGCAA

upper sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 21
gtatttcttgttgtacatttggattattccaattatcagacctcattaagccctaaactttgcagttattttttggaatctcatgattggtacagGAACTGATCCAACAGATGGCAAATGTTCAGTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTA
           |   | ||||| || |     ||||  |  || ||| || |  |         ||   |   || ||| |||| ||   |  |||||||| |||| |||||||||||||| || ||||| |||||||| ||||| || ||||||||||| |||||||| ||||||||  | || ||||| || |
----------gtacgcttttggtttgtaattcttat--gtacttattcagactaagg-------gtggctgactgtaatttcataatgactgtagGAACTGGTCCAGCAGATGGCAAATGTACAATACACTGAGAACCTTACTGAAGATCAGTTGGATGCCATGGCAGGAAGTGAGACTTTACGTTATCATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcattaagccctaaactttgcagttattttttggaatctcatgattggtacagGAACTGATCCAACAGATGGCAAATGTTCAGTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTA
          ccctaaa  putative branch site (score: 3)
                         ttattttttggaat  TA-rich tract